Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.012 8.8 7.0 0.1 18 44 2 28 1 28 0.95

2 4 3.2e-12 2.4e-09 37.7 4.6 3 44 118 158 116 158 0.96

3 4 3.7e-09 2.7e-06 27.9 2.5 3 43 214 253 212 254 0.94

4 4 9.7e-05 0.071 13.7 0.6 3 43 269 311 268 312 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.012	8.8	7.0	0.1	18	44	2	28	1	28	0.95
2	4	3.2e-12	2.4e-09	37.7	4.6	3	44	118	158	116	158	0.96
3	4	3.7e-09	2.7e-06	27.9	2.5	3	43	214	253	212	254	0.94
4	4	9.7e-05	0.071	13.7	0.6	3	43	269	311	268	312	0.82

Coding Sequence: atgaaatgcaatCTTTGCGATATCATTCTTAATGCAGATGAAAAATCCCTGCTACTCCTAGAACACATAAAAGATATGCATAAAGAAGTTTTTGAGTTACACAAGGATAATCCGGAAGCGAATGTTGGATTCCGCATTGAGTtcctacatttaaatgtattgaaAGATGATGCTGATCCTAAAACTGAACCTATCATACTGGGGGAGATGTGTGAGGCCACCACTGAGCCTTTGTCGAAAGTGCCTGAGCCTGCCACTGATAAGGACGATGAAATCAATACACAGTATGTGATGATTaacaagaagaagaaaaagaggCCCGAAACTTCTGAAGCGCGCAAAAGGAGCTGGGTGTGGAAATACTTCGACAAGCTGAGCAATATAATCTACCGCTGCAACTTGTGTCACGTGGTGCTGTCCATCAAGGGTTGCAATACCAACAATATGAACCGTCACGTGAGGACCAGACATCCCCACGTGTTCAGGAAGGAGATATCCAGACGAGAGCCTTCTGAGAGCTATGACTTGAGCAGCGAAGTGGAGACTCCGTATGCTATAAAGACGGAGGAGATATATGCAAGCGACCGGGATTTGGAAGATATGTTGGAGAGTTCTAACCAGAAGCTGCGTCGCAGTTGGATCTGGTCGTACTTCGAGCGCGTGTCGGCCGCGCAGGCGCAGTGCAAGCTGTGTCGCCGACACATCACGCACGGCGGCAACGCCACCGGCAACATGAACAGACATCTCAAAATGATACACAACAAGACGGGATATCAGAGTGACGACAAAGGCGACAACACGTGGGTGTGGAAGGTGTTCGAACAAACCGAGGATGACGCGTACACGTGCAAAATCTGTCAGTACCGATGCGAGAAGTTCGTCAACGATGATCAAAGCGTGGCTTGCATGCTACAGCATCTCAAACAAGAACACGGCGTGGTCTCGGGAGATCAAATCATCACGGGGACCGATTGTGATGACGACGAACAGTGA
Protein Sequence: MKCNLCDIILNADEKSLLLLEHIKDMHKEVFELHKDNPEANVGFRIEFLHLNVLKDDADPKTEPIILGEMCEATTEPLSKVPEPATDKDDEINTQYVMINKKKKKRPETSEARKRSWVWKYFDKLSNIIYRCNLCHVVLSIKGCNTNNMNRHVRTRHPHVFRKEISRREPSESYDLSSEVETPYAIKTEEIYASDRDLEDMLESSNQKLRRSWIWSYFERVSAAQAQCKLCRRHITHGGNATGNMNRHLKMIHNKTGYQSDDKGDNTWVWKVFEQTEDDAYTCKICQYRCEKFVNDDQSVACMLQHLKQEHGVVSGDQIITGTDCDDDEQ

Sequence clustering based on sequence similarity using MMseqs2