Hfas008564.1
Basic Information
- Insect
- Hylaea fasciaria
- Gene Symbol
- -
- Assembly
- GCA_905147375.1
- Location
- LR990221.1:1875942-1879047[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.55 37 5.2 3.2 1 23 223 246 223 246 0.92 2 9 0.066 4.4 8.1 0.4 2 23 271 293 270 293 0.93 3 9 0.0042 0.28 11.9 0.9 2 23 312 333 311 333 0.97 4 9 0.0014 0.092 13.4 0.7 2 23 338 360 337 360 0.95 5 9 0.33 22 5.9 1.0 1 19 363 381 363 381 0.93 6 9 2.9 1.9e+02 3.0 0.5 1 17 396 412 396 419 0.75 7 9 0.038 2.6 8.8 2.1 1 23 426 449 426 449 0.93 8 9 0.011 0.75 10.5 3.9 1 23 455 477 455 477 0.97 9 9 8.1e-06 0.00054 20.4 0.5 1 23 483 506 483 506 0.98
Sequence Information
- Coding Sequence
- ATGGATATCACCGGCAATACGAGCCTGGAAGCAAAACAATTCAATGTTTGTCGTTGCTGCTTGAAAGGCGACGGAGTAAAAGATATTTCAACCGAATATCACAATTTTAGGGAGCTGGAAACTTACGAAGCGATGCTAAAAGACACTTTCAATATTCAGTTATCTCACCAACTATACAGTGGTTCAACCAAGTGGCAGATCTGTGAGCCTTGCACCGTCAGTCTCCGAGATGCGACCACATTCAAACAGATGGTGGTGCGGAGTGAACAGATGTTCATGGACTATTTGCGAAGCTTGCAGACTCACGATAGAGATATTCTACCGGAACAAGAGCTGAAAGTGGAGTCCATCAAAATGGAGCCTCCGTCGGAGACAGTGTGCGCATTCGACATCTGTCAAGACATAGCCAATGACAGTTTTGATGATGACGAAATACTAGCAAATGTAAAACTCGAGCTGAAAAAGACAGGTGGCGCCACCGTGCTGAAACCACGGAAACGGATACGATCGAGTTACAAATCAAAGTCTGAATTGTCAAACGCACCGCCGAAGAAAGACTGGTCGAAAATAGCGGAGCGACGCGGCACCGGCCCCCTACTACGCGAAAACTCGCTCAAACTCATCCAAAACTCGACGATATGCGTCTTCCAGTGGAACAAGAGTCGCTACCGCTGCTTCTGCTGCAAAGAGCCATTTTCAGACATCAACCTGCTAAAACAACACACAACCAACTCCCACACAATCGAGAGCATAGAGAAAAAGATAATTTCCCAGCAAAATCGACTCGTCAAAGTCGAAATATCGAGTCTACGCTGCAAATTGTGTACGGAACAACTCGAAGACTTGTCGACATTGAAACTCCATCTATCTGAAACCCATGGTATGAGCGTCGGCGAAGACTTACTAGTACCATTTAAGATCGAGAAGGAACTCCAATGCCAGATTTGTCGCGAAAAGTTCACACTGTTCCGATTATTAAATATACACGTGAACAAACATTTTCAGAAGCAAGTCTGTCATATATGCGGCGCAGGTTTCTCGAATCTAGTGTTTTTAAATCTACACCGGACGCGGTCGCATCGTCCGTTCAACTGTAAACCTTGCGATATCAGTTTTAGTAATAAAATCGACAAGAAAAAGCACGACATCGCAATCCACAATAAGAAATACGAAAAGAAATTGCGATTTCCATGCGCTTTTTGCTCTCAGAGATTCTACCAAGAAAACTTTCGGGTGAGCCATCTAGTCGATGCGCATGGTATGCCAAAACCCGAGTTCAAGTGTGGCGTGTGCCCAAAAAGTTTCCTAACTCGAAGTTTGTGCAATAACCACGTGAAAAATGTACATAATAAGGAGAAGAAACACGAGTGCGATTTGTGCCATAACTTTTTTTATAGTAAGTCTGATGTGGCTAGGCATAGGGTTACTCATACGGGTGAGAAGAAGTATTCTTGTCTGATATGCAGCAACCCCTTTGCGACGAGGGATTCTTTGAGGCGGCATATGAAGCGGGCTCATGTCGGCGTGAATTAA
- Protein Sequence
- MDITGNTSLEAKQFNVCRCCLKGDGVKDISTEYHNFRELETYEAMLKDTFNIQLSHQLYSGSTKWQICEPCTVSLRDATTFKQMVVRSEQMFMDYLRSLQTHDRDILPEQELKVESIKMEPPSETVCAFDICQDIANDSFDDDEILANVKLELKKTGGATVLKPRKRIRSSYKSKSELSNAPPKKDWSKIAERRGTGPLLRENSLKLIQNSTICVFQWNKSRYRCFCCKEPFSDINLLKQHTTNSHTIESIEKKIISQQNRLVKVEISSLRCKLCTEQLEDLSTLKLHLSETHGMSVGEDLLVPFKIEKELQCQICREKFTLFRLLNIHVNKHFQKQVCHICGAGFSNLVFLNLHRTRSHRPFNCKPCDISFSNKIDKKKHDIAIHNKKYEKKLRFPCAFCSQRFYQENFRVSHLVDAHGMPKPEFKCGVCPKSFLTRSLCNNHVKNVHNKEKKHECDLCHNFFYSKSDVARHRVTHTGEKKYSCLICSNPFATRDSLRRHMKRAHVGVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -