Hfas002263.1
Basic Information
- Insect
- Hylaea fasciaria
- Gene Symbol
- -
- Assembly
- GCA_905147375.1
- Location
- LR990214.1:4020297-4029349[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3 89 4.0 1.6 5 23 299 317 290 317 0.88 2 12 0.15 9.9 7.0 4.5 1 23 325 348 325 348 0.91 3 12 8.1 5.5e+02 1.5 0.6 1 20 352 371 352 375 0.76 4 12 0.025 1.7 9.4 2.8 1 23 450 472 450 472 0.98 5 12 0.006 0.4 11.4 2.4 2 23 474 496 473 496 0.96 6 12 0.0012 0.082 13.6 3.4 1 23 527 550 527 550 0.95 7 12 0.0044 0.3 11.8 2.7 3 23 556 577 554 577 0.95 8 12 6.4 4.3e+02 1.9 0.1 1 19 597 615 597 618 0.81 9 12 2.5 1.7e+02 3.1 0.1 3 21 684 702 682 705 0.77 10 12 9.2e-06 0.00062 20.2 0.7 1 23 806 828 806 828 0.98 11 12 0.0024 0.16 12.6 0.7 3 23 836 856 834 856 0.96 12 12 8.1e-05 0.0054 17.3 4.7 1 23 862 885 862 885 0.98
Sequence Information
- Coding Sequence
- ATGTGGGACCTCAAGGCGTGCATCGTGTGCCTCAGCACTGGCGTAAAACTGTATAGTTTAAGTGTTGGCACGCTTCGGAGTGAGTTCAACTTGGTTTCCGGACTTCAGACAACGCAAGGAAATGGTATGCCGGGATACTTATGTGTGGAGTGCACAGAATATGTGAAGAAATACAACAAGTTTCGTGAAAAGTGCCACCGTGCACAGTATGTGTTGGAGCAAATACTGTTCAAGAATAAAGAGATCAAAATATCACACCTGAAATCATTGAATCTCCGACTGCTGAAACTTGCCCCTTCCATATCCTACATGGACTTGGACCGGAATCATTATGAACAAGTCCAATTCAAACTTGTTCGCTACTCCCGCAGTAACGTCTCCCAACTAAACTGCATACCGGTGGTCCATTACAGCACACTCACAAAAGAAGAGACATTCGAAGATGAAATGAAAGACTTAAGTAACAAATATGACATGGGAAATGTTAAGATTGAATTAGACCAAGCAACACAGGAAGATGGCTTGCCACCGCCATTACGGAGTATACTCCGCAGTGCTTTATCAACCAATTATACACCCTTGTTAAATGTAAAAGCAAATAATGATGACACACCAACAGCCATGACAACTGAGACGAAGAACGAAGCAACAGACAATCAGTTTAACGATGAAGATAATGACGATTCATTTGAACACAATGGTAATATGGAGAATGAAATGGGTGATAGTGAATGCGAAGATGATAAATTTGGACTAATGACTTGTAAATTGAATAACAAAGTAGACGGATCTAGTTTTAACGAGGAGTATGCAAAAATAGTGCCAATATCTGTGAAGGAAGCAAAAGCAGTGGTGGCCGTGCATAAATACTGTTCTGTAGGGGCGTTCCTTTGTGACTGCGGGAAGCGGTTTGCTTCTGATATTTGTGCGAAGCAGCATTCTCGTAGACATGACATGCATATTAGTGGACCCTTTCATTGCGAGATTTGTGACTTCAATTTCAAAACTGCATTCCTTCTCCAATGTCACATGACAGATCAACATATGTACAAATATTTGTGTAAGAAGTGCCCAGAAGTAAGCTTCTCTAGGCCAAAGGCGAAGTCGCATTATGTCTGGAAACATTTGCATGGTCCACAGAAGCAAAGGCCTTACGATTGGAACGGCAAAAAGCCTTCCTGGCTTAAAGGAAGTGGCTCCCGTATGAAGGGTTCCTTCTCATCAAAGCACAAGAGAGTGAACAAAAAAGTCCCTGATGACTTCCCCATATATTCTCCGATCTCCCAAGAGGAGCAATACCGTCTGGTGGAGCAGAGAAAGGAGTCCCGCAACTACTTAGAGGCCAAGTTCAAATGCGATCAGTGCTATAGAGGGTACAGACTCACTACTACATACAACAAGCATATGGCTAAGCATGATCCTTGCGACGTGTGCAAACACTACTTCCGGCTGAAGCGCACTCTCTACAAGCATATGATGATGTACCACCTCTTCAAGTTCTCGTGCCGTTTCTGCGACTTCGTCTCGACGTGCAAGGGACAAGCGCTGTACCACTACCGGTGGCACAAGAATGTAACATATGACTGTCCGCACTGTGATAAGAAGTTTTCGAAAATCTCGACTCAGCTGACGCACATAAGATTCAAGCATCCGTCGACGGATATCTGCAACCTGTGCGGACACAGTTTTGTCAGCTCCAGCGGTCTTAACTGTCACCAGAAGATGTCACACACTAAAGAAGAGAAGCTGTTGAGCGAGGCGATGACAGCGAATCCTATGCATACGTCCTTCTACTGCGGCGACTGCAAGTTACAGTTCCTGAACGAACAGGCGTACATAGTGCATCTCGGGAGCTCGCGGAAGCATGTTGAGACCAACCTATCTGTGGCGAAGCAAGAGCGTACGAGCCGCCGTACCGAGCGGCTGGAGGCGAAGGGCCCGGGCTCCGGCGCCGCCCCCCGCGCCGCCGCCCCCCACGCCGGCGCCCGCGGCCGCCCCCGCGCCGGGGGCTCCGAGGTGCTCAACACCGGCACCACCACCGCCACCAACTGCGAAGTTTGCGGCAAGTTCCTGTCTAGCGACGTGGTGGCGCGGCGGCACTACGAGGCGGAGCACCCCGGCACGGACTACCTGAAGCGGTACCTGTCTAGCGACGTGGTGGCGCGGCGGCACTACGAGGCGGAGCACCCCGGCACGGACTACCTGAAGCGGTACCTGTCTAGCGACGTGGTGGCGCGGCGGCACTACGAGGCGGAGCACCCCGGCACGGACTACCTGAAGCGGTACCTGTCTAGCGACGTGGTGGCGCGGCGGCACTACGAGGCGGAGCACCCCGGCACGGACTACCTGAAGCGCGACGTGGTGGCGCGGCGGCACTACGAGGCGGAGCACCCCGGCACGGACTACCTGAAGCGGTACATGTGCGACGTGTGCGGACACACCACCAAGCAGTACGCCAACCTGCTGGTGCACATGCGCGTGCACACGCTGGAGAAGCCGTACGGCTGCCCGCACTGCGAGCGCCGGTTCAGCATGCCCAGCAACCGGGACCGGCATCTCGTGGTGCACACGGGAGAGAAGCGCTACCAGTGCCACCACTGCAGCCGGCGCTTCACGCAGAGCACGGCCGTCAAGCTGCACATACAGACCGTGCACATGAAGATACCCTACAAGCCGTGGGACAAGAAGAACCGGAAGCGCCGCAAGGAGATGGAGCCCAACACTACGGGGTTGGACTTGCTAGCCCCGCCCCTGGGCGCCGGCGCAGCCCCCGCGCCGCAGCACAAGTTGCTGCTGGACCCGCAGGGGGAGCCCTACATCGCCTACATCAGCTACGCGGACGAGCAGTGA
- Protein Sequence
- MWDLKACIVCLSTGVKLYSLSVGTLRSEFNLVSGLQTTQGNGMPGYLCVECTEYVKKYNKFREKCHRAQYVLEQILFKNKEIKISHLKSLNLRLLKLAPSISYMDLDRNHYEQVQFKLVRYSRSNVSQLNCIPVVHYSTLTKEETFEDEMKDLSNKYDMGNVKIELDQATQEDGLPPPLRSILRSALSTNYTPLLNVKANNDDTPTAMTTETKNEATDNQFNDEDNDDSFEHNGNMENEMGDSECEDDKFGLMTCKLNNKVDGSSFNEEYAKIVPISVKEAKAVVAVHKYCSVGAFLCDCGKRFASDICAKQHSRRHDMHISGPFHCEICDFNFKTAFLLQCHMTDQHMYKYLCKKCPEVSFSRPKAKSHYVWKHLHGPQKQRPYDWNGKKPSWLKGSGSRMKGSFSSKHKRVNKKVPDDFPIYSPISQEEQYRLVEQRKESRNYLEAKFKCDQCYRGYRLTTTYNKHMAKHDPCDVCKHYFRLKRTLYKHMMMYHLFKFSCRFCDFVSTCKGQALYHYRWHKNVTYDCPHCDKKFSKISTQLTHIRFKHPSTDICNLCGHSFVSSSGLNCHQKMSHTKEEKLLSEAMTANPMHTSFYCGDCKLQFLNEQAYIVHLGSSRKHVETNLSVAKQERTSRRTERLEAKGPGSGAAPRAAAPHAGARGRPRAGGSEVLNTGTTTATNCEVCGKFLSSDVVARRHYEAEHPGTDYLKRYLSSDVVARRHYEAEHPGTDYLKRYLSSDVVARRHYEAEHPGTDYLKRYLSSDVVARRHYEAEHPGTDYLKRDVVARRHYEAEHPGTDYLKRYMCDVCGHTTKQYANLLVHMRVHTLEKPYGCPHCERRFSMPSNRDRHLVVHTGEKRYQCHHCSRRFTQSTAVKLHIQTVHMKIPYKPWDKKNRKRRKEMEPNTTGLDLLAPPLGAGAAPAPQHKLLLDPQGEPYIAYISYADEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -