Hfas008658.1
Basic Information
- Insect
- Hylaea fasciaria
- Gene Symbol
- -
- Assembly
- GCA_905147375.1
- Location
- LR990221.1:2495001-2507707[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.21 14 6.5 2.1 2 23 228 250 227 250 0.91 2 12 0.0062 0.42 11.3 3.1 1 23 254 276 254 276 0.97 3 12 0.14 9.4 7.1 6.5 1 23 281 303 281 303 0.98 4 12 3.7e-05 0.0025 18.3 0.2 1 23 309 332 309 332 0.97 5 12 0.93 63 4.5 2.4 2 23 341 361 340 361 0.95 6 12 0.0012 0.081 13.6 0.4 1 23 369 392 369 392 0.97 7 12 0.45 30 5.5 5.8 2 23 567 589 566 589 0.96 8 12 0.00071 0.048 14.3 3.8 1 23 593 615 593 615 0.97 9 12 0.0014 0.097 13.3 1.3 1 23 620 642 620 642 0.99 10 12 0.001 0.067 13.8 0.6 1 23 648 671 648 671 0.98 11 12 0.00033 0.022 15.3 0.1 3 23 680 699 679 699 0.97 12 12 0.0037 0.25 12.0 2.2 1 23 707 730 707 730 0.96
Sequence Information
- Coding Sequence
- ATGAGCAGAGCTACAAGAACCTCTACGGACCAAAGGTCTCACCTACTTCAGTTTATGAAAACTCATGAAGATCTTGCTCGGGGCAGAGTTTCTGGCCCCGATGCATCACGAAAGAATAAAACATTACTGATTGAATTAGCCGAGAAACTAAATTCAATGGGGTTTGGGGCTCATAAAACACCTGAGAAGTGGTACAAATGCTGGCAGGACTGGAAGTCTGACACTAAGGGTAAGGCCTTAAGAATAAAAAAAAGTAAGGCTGCCACGGGTGGCGGCCCCAGCGTGGCGCCATTGTCGCGCCTCGAAGAGGGGCTGATGCAATTTTTTGGGCCCGAAATGATTGAAGGGCTAACTGATCCAGATCCTTTGGAGGTGGTTGAAGAATGCACTAAAGATAACCAACAAGAGGTGGACCTGGACCTGGACCTGGACCTGGATCTGGACCTGGAAGCGACATGTGATGTACATGATAGCATGACCGAACGGGAGGACACAAGTGAACATGCCATTCTGGTAATAATAGATGAAGACTATGCTGTTGATGACTATGACAGTGATTGCTGTCTAATGACAGATGAACAGCTACAATCAAAACTAACTAACGCGGAAACCAGCTCCAGCCCACAAACCAAGGCACAAAAGGATTACGAATATAGGTGCAGAAAGAGGTTGGAGAAACTGAACTGTCACATATGCAATCTCAAATTTGCCAGCAGAGGGTTATGCTTGGCACACCAAATGGAGCAACATACCCCTAAGTATGTCTGTGAGATCTGCGGCAAACAATTTATGCACTCTACCGATCATTACCAACATATTAGAGAGCATCGGCCGCCGAGATTCAAATGCTCTCTCTGCGACTACAAGACCTTGCACAAGATAAACATGCACAAGCATATCAGGACACATACTGGTGTGAAACCCTACATTTGCGAGGTGTGCGCGTCCGCGTTCCACAACGCGTCCAACTTGCAAGCCCACATGCGCCGCGCGCACAGCGACGGCCGCCCCCGGACCAAGCCGTGTCCGCAGTGCGGCCGGCACATCACCCTGCTCCACATGTACAAACATATGGCCACGCACGATCAAACCAAACGGTACATATACGAATGTGAAGTCTGCAGCGCCCGCTTCTCATATCGCGGGAGCTGGAAGTCACATCTTGAAAAACAGCACAACATAAGACTGCCGCAAATTAAGCAGGGCCGGCGCAAAACGAACATCATAAAGGGGCACATTCCAGAGGAAAACCTAATTGTTATCGAAGCTATGATGAAGGATGATGGGCTGCCTACGATGCTGTGCGACACTTGCCTTGCGAAGCTTTCCATAGCGTTTCAATTCAAAACTACATGCATGCAGTCAGATAAAATTCTAAAACAGTGTCTTAGAGGCAAGGTTGTCACCAAACAAACCATAAAGAAGGAGGTGGACGAAGAATGCAACGAAGACCGACAAGCGATGGACCTAGAAGCGACATGTGATGTTGATGATCGCATGACCAAACTAGAGGATATAAAAGTTGAGAACGATGATGTAGATGATGGAAGTAATGTTGGTGTGATGACAGATGAACAGCTACAAACAAAACTAAGTAATAAGAGAAGGAGGTACATCCCAAAAACCAAGTCCCGACTACTGGCTCGTACCAGACAGAAGATTGGGGAATATAGGCTCAATGTGATGATGGAGAAACTGCACTGTGACAAATGCAATCTCAAATTTGCCAGCAAAGAGTTATGCATGGCACACCACAGGACTGTGCATACTCCGCAGCATGTCTGCGAGGTCTGCGGCAAACGATTTATATTTCGTTCCACCTATTACTCCCATAAGAAGTCACATCTGCCGCCGAGATTCAAATGCTCTCTTTGCGACTACAAGACGGTGCAAAAGAGAGACATGGACAAACATGTCAGGGTGCATTCTGGTTTGAAATGCTACGTTTGCGACGTTTGTGCGTCCGCGTACTGCAACATATCCAACTTGTATGTCCACATGCGTCGCATGCACGGCAGCGGAGTCAAGACTAAAGCGTGTCCGCGTTGCGGACGAAATTTCACCGCGGCTTACCTAAATAGACATCTAGCCACGCACGATGTCACCGAACGGCTTAGGCACGAATGTGAAATCTGCCACGCCCTCTTCATACGCCGATGGAACTGGAAGAAACATCTCGAGAAACAGCACAACATAAGGCTGCCGCAAATTAAGCAGGGCCGGCGCAAAACGAACA
- Protein Sequence
- MSRATRTSTDQRSHLLQFMKTHEDLARGRVSGPDASRKNKTLLIELAEKLNSMGFGAHKTPEKWYKCWQDWKSDTKGKALRIKKSKAATGGGPSVAPLSRLEEGLMQFFGPEMIEGLTDPDPLEVVEECTKDNQQEVDLDLDLDLDLDLEATCDVHDSMTEREDTSEHAILVIIDEDYAVDDYDSDCCLMTDEQLQSKLTNAETSSSPQTKAQKDYEYRCRKRLEKLNCHICNLKFASRGLCLAHQMEQHTPKYVCEICGKQFMHSTDHYQHIREHRPPRFKCSLCDYKTLHKINMHKHIRTHTGVKPYICEVCASAFHNASNLQAHMRRAHSDGRPRTKPCPQCGRHITLLHMYKHMATHDQTKRYIYECEVCSARFSYRGSWKSHLEKQHNIRLPQIKQGRRKTNIIKGHIPEENLIVIEAMMKDDGLPTMLCDTCLAKLSIAFQFKTTCMQSDKILKQCLRGKVVTKQTIKKEVDEECNEDRQAMDLEATCDVDDRMTKLEDIKVENDDVDDGSNVGVMTDEQLQTKLSNKRRRYIPKTKSRLLARTRQKIGEYRLNVMMEKLHCDKCNLKFASKELCMAHHRTVHTPQHVCEVCGKRFIFRSTYYSHKKSHLPPRFKCSLCDYKTVQKRDMDKHVRVHSGLKCYVCDVCASAYCNISNLYVHMRRMHGSGVKTKACPRCGRNFTAAYLNRHLATHDVTERLRHECEICHALFIRRWNWKKHLEKQHNIRLPQIKQGRRKTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -