Hfas015775.1
Basic Information
- Insect
- Hylaea fasciaria
- Gene Symbol
- -
- Assembly
- GCA_905147375.1
- Location
- LR990220.1:1885805-1901145[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00032 0.021 15.4 0.9 1 23 196 219 196 219 0.96 2 11 0.0021 0.14 12.8 1.5 3 23 228 248 226 248 0.95 3 11 3.6 2.4e+02 2.6 3.9 1 23 252 275 252 275 0.96 4 11 0.0004 0.027 15.1 0.6 2 23 318 339 317 339 0.96 5 11 0.013 0.85 10.4 0.9 3 22 351 370 350 374 0.90 6 11 0.0009 0.06 14.0 1.5 1 23 414 436 414 436 0.97 7 11 0.026 1.8 9.4 0.4 3 22 446 465 444 469 0.88 8 11 5.5e-06 0.00037 21.0 0.2 1 23 477 500 477 500 0.93 9 11 0.00079 0.053 14.2 6.0 1 23 506 529 506 529 0.96 10 11 0.00012 0.0079 16.8 2.1 3 23 538 559 536 559 0.91 11 11 1.9 1.3e+02 3.5 1.5 1 23 565 588 565 588 0.92
Sequence Information
- Coding Sequence
- ATGACGGACCCTGACTCGGCGCGGTCGCGGCGGAACCTCGAGCAGGAGAGCGCGACGGCCTGCGAGGAAGTACGCGGGCGGTGGTCACGCACGCGGGCGGAGCGGTTCGTCGCGAGAGATCGGGGTCGGTTTACGGTCGGGAGGTGGATGTCCTGCTACCTGGGCCGAAGCCGGCGCGAGAATTTCATCCAGGGGTTCGGTATAGGTCGGGAGGTGGATGTCCTGCTACCTGGGCCGAAGCCGGCGCGAGAATTTCATCCAGGGGTTCGGTATAGGTCGGGAGGTGGATGTCCTGCTACCTGGGCCGAAGCCGGCGCGAGAATTTCATCCAGGAATGCGGATGGCGATTTGCTGGAGCCTCTTACTGGCAGTCGGAACGGTGGCGGCGGCGACACGTCCGTACACTGCGGGAGCCTCAAGCAAATGCCAGCGATCTCTGTCGCTGCACTGCTTTTTATTATCGCGGCGGCGCCGCGGTGTCGCGGGACTGGCGAGCGTGGTCGCGCGCTAATTATTTTAACACTAGAGGAAGTCCTAAAGGAGCGGACACACACGGCGCTACGCGACGAGTACGTGAACGCCATGTTCAAATGTGACAAGTGTGTGACCACCTTTACAAACGAAGATGATCTCATCGAACACTCGACGACGAAGCATACTATGCACGCGGCGAAGCACCTCTGCGAGGTTTGCCAGAGGTGGTTCCGCAGTGAGTACTCGCTGAAAGTGCATATAAGGCAGCACACCCACCGCTACCGCTGCGTGCGGTGCGCCCACTGCAGCCGCACGCGGGCCGCCGCCTGGAGGCACTACCAGAAAACGCACACAGAGAGTGAGAATTACGACATCGCCGCTAAAGCCTACCAAAGCTATGAAGAGAAGAAACTGCAAGATGTCAAACCTAGTATAGTAAAGTGTCGACATTCCAGTCCCAAGTCGGAGGCGCAGATCCCTTGCGGGTACTGCGACAAGCGGTTCCGCTGGCGGACCTCGCTCCGCAAGCACGTGGAGCGCCACCTGGTGGAGGCGGGCGCGGCGCGCCGCCCCTACTGCGAGCCCTGCCGCCGGGGCTTCGCCACCACGCCCAACCTGAGGAAGCACCAGCGCACCAGCTCCAAGCACCAGATACAGCTCAGGCTGAGGAAGCTGAAGGCGGGCCCGGCCGCAGCCCCGGAGCCGGCGCTGGAGGCCGAGGACATCGAGAGCATCAAGTCCAGGATCAACAGCCAGCGGGAGCAGTTCCCCTGTCCGCAGTGCGAGAAGAAGTTCCAGTGGAAGGGGAACCTGCTGCGCCATCTGCACAGCCATGCGGCGAGAGCTAACGGCGATCTGGTCTGTGCACCTTGCAACCGTACATTCTCCTCCATAGCGACGTACAAGCAGCACATGAAGATAAGCAGAAAACATGTATCAGAGGACGAGTTCAAATACATGTGCAGCGACTGCGGCAAGCGGTTCGCGAACAAAATCAAACTGCGCGACCACATCGACTGGGAGCATCTCAAGAACTACACGCATAAATGCGCCGACTGCCACAAGGTGTTCAAGAGCCATACGTCGCTGTACCTGCACCGGCAGGTGGTGCACCGGCGGCAGGGGGCGGAGCACCTCTGCGACCACTGCGGGAAGGCATTCCCGAACAAGACGAAGCTCAGCAGCCACATAACGGGCCTCCACAGCCGCGCGGCGCCCTTCGCGTGCGGCGCCTGCGCCGCGCGCTTCAGCTGGCACTCGTGTCTGTCGCGCCACGTGCGCCGCGCGCACCGGGGCCTCGCCCCCGCCCCGGGGCCGCCCGGCGGGGCCTGA
- Protein Sequence
- MTDPDSARSRRNLEQESATACEEVRGRWSRTRAERFVARDRGRFTVGRWMSCYLGRSRRENFIQGFGIGREVDVLLPGPKPAREFHPGVRYRSGGGCPATWAEAGARISSRNADGDLLEPLTGSRNGGGGDTSVHCGSLKQMPAISVAALLFIIAAAPRCRGTGERGRALIILTLEEVLKERTHTALRDEYVNAMFKCDKCVTTFTNEDDLIEHSTTKHTMHAAKHLCEVCQRWFRSEYSLKVHIRQHTHRYRCVRCAHCSRTRAAAWRHYQKTHTESENYDIAAKAYQSYEEKKLQDVKPSIVKCRHSSPKSEAQIPCGYCDKRFRWRTSLRKHVERHLVEAGAARRPYCEPCRRGFATTPNLRKHQRTSSKHQIQLRLRKLKAGPAAAPEPALEAEDIESIKSRINSQREQFPCPQCEKKFQWKGNLLRHLHSHAARANGDLVCAPCNRTFSSIATYKQHMKISRKHVSEDEFKYMCSDCGKRFANKIKLRDHIDWEHLKNYTHKCADCHKVFKSHTSLYLHRQVVHRRQGAEHLCDHCGKAFPNKTKLSSHITGLHSRAAPFACGACAARFSWHSCLSRHVRRAHRGLAPAPGPPGGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -