Hfas009154.1
Basic Information
- Insect
- Hylaea fasciaria
- Gene Symbol
- -
- Assembly
- GCA_905147375.1
- Location
- LR990203.1:2306114-2311841[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.6 5.1e+02 1.6 0.7 6 23 126 143 126 146 0.82 2 13 2.4 1.6e+02 3.2 1.9 3 23 184 208 182 208 0.85 3 13 1.5 1e+02 3.9 0.5 2 19 219 236 218 241 0.74 4 13 0.2 13 6.6 1.6 1 23 246 269 246 269 0.96 5 13 9e-05 0.0061 17.1 2.5 1 23 275 297 275 297 0.97 6 13 3.4e-06 0.00023 21.6 1.0 1 23 304 326 304 326 0.98 7 13 0.00023 0.016 15.8 2.5 1 23 331 353 331 353 0.96 8 13 0.001 0.07 13.8 2.9 1 23 359 381 359 381 0.99 9 13 3e-06 0.0002 21.8 0.7 3 23 388 408 386 408 0.97 10 13 2.6e-05 0.0017 18.8 3.2 2 23 415 436 415 436 0.98 11 13 0.29 20 6.1 0.3 2 23 446 468 445 468 0.95 12 13 1.5e-05 0.001 19.6 0.6 1 23 473 495 473 495 0.98 13 13 0.012 0.84 10.4 6.0 1 23 501 524 501 524 0.96
Sequence Information
- Coding Sequence
- ATGCCTCCAGACGATTCAGACGATGAACCGCTGTCGGTTTTGGCGGCGCTGCAACAACGACGCGAGTCGGGGCTTGAAATACTACCAATTTTTGAAACAGACAATGCTATTGCAAAGGTACAGCCAGTGAAGAAGGAATGTGAAGTGTCAATAGAGCTGCAGTCATTTTTAGAAGATGAACAATCCGCTGTGGTTGAAAGGCCGGCAGATGTGTGGTTGTATCTAACAGATTTTACTGCATCTGGGCCGTATAGCTGCTTGCTTTGCTCAGAGTGGTTTATTAACAAAAATAGAATAATAATCCACTATGTGATGGATCATAAGAAAGATTACTGCGGAATCTGCAGATATTTTGTAGCGAGTAGGGAAGCATGCTGTGGTGTAATTTTTGGTGATAAGGTGTTTTTCGTTCACCACTACTTGGAACATCATAACCGCGTCAACCCGACGTATCTACTCAAATGCTGTAAGTGCTCCATCGTGCTCCAAAGTGTGGAGGAAATGAGAAGCCACTTTGAAGCTGAGCACCCAATGTCACGGAAGCTATTTTGTTCCATGGAGCAATGCAATTTCAGACCTTTTATACACAGGAAGACATTTTTAATTCATTTGAAGACTATCCACGATCCAGCGAGTCGGCAGTCTCGCCGAGTCACCTGCAACATGTGCGGGCTAGAGTTCGAAAGTACCAAAGCCTGCAGCATGCATGCGCTGCGAGCGCACGGGCCTGCTAAGTTCAAGTGTACGTTGTGCAATGAAATACTGCACACTAGTGATGAGAGAAAGATCCATTACCTGATTCGCCACCCGGGCCGGTACCAGTACCAATGCGAGACGTGCGATAAGTCATTCCAATATAGGTCTTCTCTATACATGCACAAACAGGAACATTCACCTAATAAGAAAGATTACACTTGCAACTATTGCGGGAAAGTATTTATGAAAAAAGACTCCTTCAGAGAGCACGTATTGATCCACGAGGCGCCGCGGCACGCCTGCTCCTTCTGCCCGATGCGGTTCGTGCAGCGCTCCAACATGCTCCGGCACGAGCGCCGGCACACGGGCGAGAGACCTTACACGTGCCAGTTCTGCCCGAGGACTTTTGCTGATAAGGGCGCCTGTACTTCACATACAAGGACTCATCAAAAGACATCGTATGGGTGTGTGTACTGCGGTCAAACTTTCGCGCAGAAGTCCAAATTGACTTATCACATTCGGAAGCATACTGGAGAGAATTTGGAAACATGCTCGCTCTGCTCGAAGATATTCACGAGCGCGTGCTCGCTCCGGGAGCACATGCGCACGCATCAGAGGAAGAAGATGAACAAAACGGTCAAGTGCCCTCTCTGCCAAAACATGTACCTCGAGGAAAAGTCAATGATGCGGCACATGCGGTCCGCGCACACCGGCGTCAAGTACAAGTGTCCCCTGTGCCGCAAGTCTGTCACCTCGGCCAGCTCGCTGCGGGAGCACGTGTTCACGCACAGCCGCGTGAAGACCTACCGGTGCAAAATCTGCCCGAAATCCTGCCACTCGAAGAAAACAATAATCAAGCACGTAAAAAACAGACACGGAGTGAAATCGCAGGAGGTGAGGGCCCACTTCCGGCACCTGGAGCCCGCGGAGTGCGGCCTCGGCCTCGACGACGAGGTCATGGAGAGGATCTTCGGGAAACGCAAAAAAAATCTAAACAAGGACCTGCCAATGGGAGATTTGAAATACACCGATCTCCAACCACCCATCGAAACTCACAAATCGCAAGACACAGGCACAGACCCTGTGCCTTCGGAAGAGAGCGAAAGTGAAGATGTAATTGCTGTAAATGAAAAGAGGATATCTATAAAAATAGAACCCGTTGACAATGAAGAGATTCCTCCGCCTGACTTCGTGAATGTTAAGATCGAGTGCATGGACGAGAATGAATTTTGTGACGCGGAAATGACATAA
- Protein Sequence
- MPPDDSDDEPLSVLAALQQRRESGLEILPIFETDNAIAKVQPVKKECEVSIELQSFLEDEQSAVVERPADVWLYLTDFTASGPYSCLLCSEWFINKNRIIIHYVMDHKKDYCGICRYFVASREACCGVIFGDKVFFVHHYLEHHNRVNPTYLLKCCKCSIVLQSVEEMRSHFEAEHPMSRKLFCSMEQCNFRPFIHRKTFLIHLKTIHDPASRQSRRVTCNMCGLEFESTKACSMHALRAHGPAKFKCTLCNEILHTSDERKIHYLIRHPGRYQYQCETCDKSFQYRSSLYMHKQEHSPNKKDYTCNYCGKVFMKKDSFREHVLIHEAPRHACSFCPMRFVQRSNMLRHERRHTGERPYTCQFCPRTFADKGACTSHTRTHQKTSYGCVYCGQTFAQKSKLTYHIRKHTGENLETCSLCSKIFTSACSLREHMRTHQRKKMNKTVKCPLCQNMYLEEKSMMRHMRSAHTGVKYKCPLCRKSVTSASSLREHVFTHSRVKTYRCKICPKSCHSKKTIIKHVKNRHGVKSQEVRAHFRHLEPAECGLGLDDEVMERIFGKRKKNLNKDLPMGDLKYTDLQPPIETHKSQDTGTDPVPSEESESEDVIAVNEKRISIKIEPVDNEEIPPPDFVNVKIECMDENEFCDAEMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -