Basic Information

Insect: Hylaea fasciaria
Gene Symbol: -
Assembly: GCA_905147375.1
Location: LR990221.1:2293833-2295773[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.021 1.4 9.7 0.4 1 23 163 186 163 186 0.97

2 14 0.0019 0.13 12.9 11.0 1 23 191 213 191 214 0.96

3 14 0.00011 0.0076 16.8 3.0 1 23 218 241 218 241 0.97

4 14 0.031 2.1 9.1 2.2 2 23 244 266 243 266 0.95

5 14 0.035 2.4 9.0 0.4 2 20 273 291 273 293 0.92

6 14 0.013 0.9 10.3 2.6 1 23 343 366 343 366 0.92

7 14 0.13 8.8 7.2 0.2 2 23 397 419 396 419 0.94

8 14 0.09 6.1 7.7 1.2 1 23 440 463 440 463 0.95

9 14 0.069 4.6 8.1 0.2 1 23 468 490 468 491 0.92

10 14 5.4e-05 0.0037 17.8 0.1 1 21 497 517 497 520 0.90

11 14 0.63 42 5.0 0.3 2 23 526 548 525 548 0.89

12 14 0.0004 0.027 15.1 3.6 1 23 552 575 552 575 0.96

13 14 0.00024 0.016 15.8 2.1 3 23 583 603 581 603 0.96

14 14 0.00022 0.015 15.9 0.2 1 23 609 631 609 631 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.021	1.4	9.7	0.4	1	23	163	186	163	186	0.97
2	14	0.0019	0.13	12.9	11.0	1	23	191	213	191	214	0.96
3	14	0.00011	0.0076	16.8	3.0	1	23	218	241	218	241	0.97
4	14	0.031	2.1	9.1	2.2	2	23	244	266	243	266	0.95
5	14	0.035	2.4	9.0	0.4	2	20	273	291	273	293	0.92
6	14	0.013	0.9	10.3	2.6	1	23	343	366	343	366	0.92
7	14	0.13	8.8	7.2	0.2	2	23	397	419	396	419	0.94
8	14	0.09	6.1	7.7	1.2	1	23	440	463	440	463	0.95
9	14	0.069	4.6	8.1	0.2	1	23	468	490	468	491	0.92
10	14	5.4e-05	0.0037	17.8	0.1	1	21	497	517	497	520	0.90
11	14	0.63	42	5.0	0.3	2	23	526	548	525	548	0.89
12	14	0.0004	0.027	15.1	3.6	1	23	552	575	552	575	0.96
13	14	0.00024	0.016	15.8	2.1	3	23	583	603	581	603	0.96
14	14	0.00022	0.015	15.9	0.2	1	23	609	631	609	631	0.96

Sequence Information

Coding Sequence: ATGTACGGTGGTTCAGGCGAACATTGCCTTACCACGTTTCTAACGCACGAAGAAGTTCTTGGAGAAAAGCGCAACACGCTTTTATCCGTTAATTGTTTCTTTTCAGGTCGTAAGCGGGAACGCATTGTGGTACCGAACGTACAGAGGAAGCGAAACCTCGTGGTTTTGTTCAACAATACCACAATAGTGCCTTTTAAACATCGCGGGAAGTATCTCTGCTTTTTCTGCGTGACTGAAATGGAAAATCGTCAACATTTACTCGATCACAACGAGACGCATTTGCCGTGTTGCCCTGACGATCATTCCCTCAAATGGATGAAAGGGTTCGATTATGAAATCAAAGTAGACGTGTCCGACGTAAAATGCAAAGTTTGCCTCGAACAGTTCCATAGTATCGAAGCCATAGGCTTCCATTTGGCAAAAAAGCACTGTTTGCCTTATGAAGTGGACACGCCAGTCGTTCTCTCCGCGTACAGATTGGTAGACTTTAAATGTCTCATATGCGATGGAAACTTTCAGGGCTTTAGGAATCTCGTGAAACACGTGAACAGTGAACATCCAAATAACTGCTTCCAATGCGATAATTGTCATCACACGTTTAACAAAAAGAGAGACCTGCAATCGCATATAAGACACCACCATAAGGACGAGTACAGATGCTCGAAATGCTCGGAGAAGTTCAGCTCGCACGCTGAGCTGATTCGGCACAAAACTACAGACCACATTTCCCAATGCAATCTATGTTTTACAACTTTTTCTTCGTTCAAAATGCGATTGAAACATATGAAGGGCGAACATGATATAAAAGGCGGTGGTACTTGCGGATTTTGCAGCAAACAATTCAACACCCAAAACGGACTGTTGGATCACACGGCAAAATGCACAGTTGGGGGTCTAAAAAAAGTTGAAGCAGCTGACGTCGTGAAGGATAGGGCAAAACAGGACTCGGTTAAGGCTATAAGAGACAAGTTGGCCTACATCTTCAACAACACCACAGTTCTGCCTTTCAAGTTCTTTCACAACCGTTTCCGATGTTTCTACTGCCCGAAAGAATGCAACAAGTGGCAGAATGTACGCAATCACTCCAACGCGGAACACCTCGTGTGCGACGTGAAGATGAAATGTATGAAGTTAAAAACGCTATGCCCTTCCAAAGGGTTGAAGCTTAAAGTTGACATCTCATCAATGCAATGCAAACTGTGCTCGGTCCAGTCCACACAATTGGACACCCTGTTGGCGCATCTAGAAAATGAGCATGATGCGAAGCTAACGAATTGCCTTGAGTATGTCCACCCGTTCAAACTGATGCAGGACAGATTTCCTTGCACATGGTGTGAACAAGAGTTCAGGCATTTCGGCTTGACTTTGAAACACGCTAATAAAGAACACACCGGGAACAAATATCTGTGTGTCTACTGTGGTAGGCCGTTTCTTACAGGCAACGGATTACGTGCGCACGTGGCCCGGCATCACCTCCCGGATTATCGATTCGAGTGCACAAAGTGCGACCAAAGGTTCCGCACGCCGAGGGATTTAGCCGAGCACCTGGGCGCTGCTCATGGGCAGAAAGTCATCAAATGTTTACAGTGCAAGAAACTCTTCGTGTCCTACTATGCGCAAAGAGTTCACGCTGTTAAGGTGCACAATGGTGGGCACAACTGTTCCTACTGCGGATTCGTGTTCACTACGTACACGCGGATGACAAATCACATTCGGAGGCTGCATCTGGACGAGAAGAATGTGAACTGCACGTTGTGTGACAAGAGGTTCTTCGATGCGCGAAGGTTGAGGCACCATATGCTCGTGCATGTTGGTGAGAAGATGTTTGTGTGCGACTATTGCGGGAAACAGTTTTTGAGGAAGAAGAATCTGGTTGGACATATCGGTGTACATGTTAAGAATGCTGGTTTTTCCGCTAGTGGGGAAAGTCTGGCTTATTAA
Protein Sequence: MYGGSGEHCLTTFLTHEEVLGEKRNTLLSVNCFFSGRKRERIVVPNVQRKRNLVVLFNNTTIVPFKHRGKYLCFFCVTEMENRQHLLDHNETHLPCCPDDHSLKWMKGFDYEIKVDVSDVKCKVCLEQFHSIEAIGFHLAKKHCLPYEVDTPVVLSAYRLVDFKCLICDGNFQGFRNLVKHVNSEHPNNCFQCDNCHHTFNKKRDLQSHIRHHHKDEYRCSKCSEKFSSHAELIRHKTTDHISQCNLCFTTFSSFKMRLKHMKGEHDIKGGGTCGFCSKQFNTQNGLLDHTAKCTVGGLKKVEAADVVKDRAKQDSVKAIRDKLAYIFNNTTVLPFKFFHNRFRCFYCPKECNKWQNVRNHSNAEHLVCDVKMKCMKLKTLCPSKGLKLKVDISSMQCKLCSVQSTQLDTLLAHLENEHDAKLTNCLEYVHPFKLMQDRFPCTWCEQEFRHFGLTLKHANKEHTGNKYLCVYCGRPFLTGNGLRAHVARHHLPDYRFECTKCDQRFRTPRDLAEHLGAAHGQKVIKCLQCKKLFVSYYAQRVHAVKVHNGGHNCSYCGFVFTTYTRMTNHIRRLHLDEKNVNCTLCDKRFFDARRLRHHMLVHVGEKMFVCDYCGKQFLRKKNLVGHIGVHVKNAGFSASGESLAY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -