Hfas016070.1
Basic Information
- Insect
- Hylaea fasciaria
- Gene Symbol
- -
- Assembly
- GCA_905147375.1
- Location
- LR990220.1:5471382-5483368[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.2 2.2e+02 2.8 0.1 1 8 45 52 45 59 0.86 2 13 0.0014 0.097 13.3 1.3 1 23 271 293 271 293 0.98 3 13 0.76 51 4.8 0.0 2 23 301 323 301 323 0.94 4 13 5.4 3.6e+02 2.1 0.4 1 23 327 349 327 349 0.86 5 13 0.0006 0.041 14.5 1.7 1 23 354 377 354 377 0.97 6 13 0.0044 0.3 11.8 1.7 1 23 380 403 380 403 0.95 7 13 0.031 2.1 9.1 3.7 1 19 415 433 415 436 0.94 8 13 0.29 20 6.1 0.3 3 23 445 464 444 464 0.93 9 13 0.12 8.4 7.2 1.4 2 23 472 494 472 494 0.95 10 13 1.4e-05 0.00093 19.7 0.9 1 23 518 540 518 540 0.98 11 13 8.7e-06 0.00059 20.3 0.1 1 23 546 568 546 568 0.99 12 13 0.00099 0.066 13.9 1.0 3 23 576 596 574 596 0.92 13 13 2.9e-05 0.0019 18.7 1.7 1 19 602 620 602 625 0.96
Sequence Information
- Coding Sequence
- ATGGAAAACCTATTGGCTTGTAGAATTTGCCTCGCTACACATGTAAAACTTTACGATATGTACAAATACCGCCTGAAAAGTGCCTACGAGAATCTAACTGGCTTCGATATGAGTCAGCCGCCGAGCCTGCACTACGTGTGTAGCTACTGCGGAGCCATGTTGAACAAGTTTGCGGTGTTCCAAAACAAATGCACTCGCTCGCAGCTCATACTGGAGCATCTAATCGGTGAACATGCCATTATAACAATGTATCACATAAAAGGCATTAACCGGGACGTGAACAACCTCTCTCAACCATACACAGCGGAAGTCATCCAAAACTTTGACACTGCCATAAATATAAAAGAGGAAATCTATGAACAGCATGGGAACTCGTCAACATGCTACATTCCCTCTGCTGCAACATGCAACTCTCCAAAAGACAATATTTTCTATGAACCTAGTATTAAATCCGATTTGAACGACATCACATTTGACAATTATGATATAGATCATTATTTAAATAATGACACGATTGGTGGCAAATTGGAAACCGATGAACAGAATAAAAAAGCCGATGATAGTGATGAAGAGCCGCTTTCAAACAAAGTGAAAAAGAAAAAACGCAAATATAAAACTATCGGCAAATGTGACACGGTTGATATTAAATTAGAGGACAATTGTGATACAGAAGCAAAGGGACGTCCAATGAAGGCTCAATTTGTTGATATCGAACAAGAAATTGAGCACAAGTTGGTGATTTTGACCAAGGAGGAGCAAATGCAAGAAGTTTTGCTAAGGAAGTCATCGTCAAACTACCAGAACTCGGTGTACAAATGCGACAGTTGCTACAAAGGGTTCATGACGGAGGTGACGTATAGGAACCACATGGCACGGCATGAGGAACGCTGCGGGCCCGAGGTGTGTTCCGTGTGCAGCACCCGGTGGGCGGACGCGCGGGCTCTGCGGGCACACACACTCATCTCACACGAGAGAAAGTACATCTGCCTGGTGTGCGGTTCCGCCTGCAAGTCCGGGCACGCGGCGCGACAGCACGCGGCGTGGCACCGCGGCGCCGTCTACCGCTGCCAGCGCTGCGGGCAGGCCTTCCAGCGCAGCACGTCGTACCTGACGCACGTGCGGCTGCGGCACGGCTCGCACGCGTGCCGGGACTGCGGCGCGAGGTTCATCGGCCGGCACGGGCTCAACCTGCATCGGAAGAAGGCGCATGCGCTGGATAGCCAGCGGAGCGCGGTGCCGCAACACGAGTGTGACAGCTGTCACTGTCACTTTGACAACAAGGAAGCTTTGACAAGGCACGCCGAGCTCGGCTGCGATGACAAACTGAGGCCGTGCCTGCACTGCGGCGCCCACTTCCCGCCCCCGCTGCTGAAGGCGCATCTGGAGGAGCACCAGAAAGCCAACGCCGTACGCACCTGCCACCAATGCGCGCTGCCCTTCGCACATGAGCGGGGGCTCGCGGCGCACCACGCAAGGGTGCACGGTGCGGGGGCGGGGGGCGTCGGAGCAGGGGCGGGGGGCGTGGGGGCGGGGGCGCGCCGCCCTAACGGCCACGTGTGCGAGGTCTGCGGGTACAAGTGTGTGACGCGGGCGGCGCTGGCGGCGCACCAGCGCACGCACACGGGGGAGAAGCCCTACCCGTGCCCCGTCTGCGGGAAGCGCTTCAGCGTGGGCCAGCGCCTGCAGATCCACCTCCGCACGCACTCCGGGGAGCGGCCGTTTGGCTGCGCGCGGTGCCCGAAGGCGTTCAAGCACAAGGCGGCGCTCAACCGACACGACCGGGTTCACACGGGGGCGAAGCCCTACACTTGTCCGCAATGTGGCAAGTCGTTCTCCCAGTCCAACTCGATGAAGCAGCACTGCGCCGGCGTCCACATGAAGATGTATATCTACTCGCGGCGGGCGGCGAACAAGCAGACCGAATGA
- Protein Sequence
- MENLLACRICLATHVKLYDMYKYRLKSAYENLTGFDMSQPPSLHYVCSYCGAMLNKFAVFQNKCTRSQLILEHLIGEHAIITMYHIKGINRDVNNLSQPYTAEVIQNFDTAINIKEEIYEQHGNSSTCYIPSAATCNSPKDNIFYEPSIKSDLNDITFDNYDIDHYLNNDTIGGKLETDEQNKKADDSDEEPLSNKVKKKKRKYKTIGKCDTVDIKLEDNCDTEAKGRPMKAQFVDIEQEIEHKLVILTKEEQMQEVLLRKSSSNYQNSVYKCDSCYKGFMTEVTYRNHMARHEERCGPEVCSVCSTRWADARALRAHTLISHERKYICLVCGSACKSGHAARQHAAWHRGAVYRCQRCGQAFQRSTSYLTHVRLRHGSHACRDCGARFIGRHGLNLHRKKAHALDSQRSAVPQHECDSCHCHFDNKEALTRHAELGCDDKLRPCLHCGAHFPPPLLKAHLEEHQKANAVRTCHQCALPFAHERGLAAHHARVHGAGAGGVGAGAGGVGAGARRPNGHVCEVCGYKCVTRAALAAHQRTHTGEKPYPCPVCGKRFSVGQRLQIHLRTHSGERPFGCARCPKAFKHKAALNRHDRVHTGAKPYTCPQCGKSFSQSNSMKQHCAGVHMKMYIYSRRAANKQTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -