Hfas004333.1
Basic Information
- Insect
- Hylaea fasciaria
- Gene Symbol
- -
- Assembly
- GCA_905147375.1
- Location
- LR990200.1:10814142-10823742[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.3 87 4.0 0.3 2 23 6 27 5 27 0.96 2 13 0.15 10 7.0 0.2 1 23 1080 1102 1080 1102 0.98 3 13 1.4e-05 0.00093 19.7 3.6 2 23 1105 1126 1104 1126 0.97 4 13 0.00013 0.0088 16.6 2.7 1 23 1132 1154 1132 1154 0.98 5 13 0.0075 0.5 11.1 5.9 2 23 1161 1182 1160 1183 0.95 6 13 1.5 99 3.9 1.2 5 23 1196 1214 1194 1214 0.97 7 13 0.0032 0.21 12.3 1.5 2 23 1220 1242 1219 1242 0.96 8 13 0.14 9.2 7.1 0.0 3 23 1253 1272 1252 1272 0.96 9 13 0.0014 0.097 13.3 0.5 1 20 1278 1297 1278 1300 0.89 10 13 0.00069 0.046 14.3 0.0 1 23 1308 1330 1308 1330 0.98 11 13 0.00034 0.023 15.3 7.1 1 23 1336 1358 1336 1358 0.98 12 13 0.00024 0.016 15.8 0.1 1 23 1364 1388 1364 1388 0.94 13 13 0.013 0.85 10.4 2.9 1 23 1394 1416 1394 1417 0.94
Sequence Information
- Coding Sequence
- ATGGATCAGCTAGTGCAGTGCCCCGTGTGCACGCTCTTCCTCCATAATGGGATGTCTCTAGAGTCTCACCTGGACACACATCCCAAAGACCAGGTTATAAGAGCCCTTTGCAGCATAGCAAACAAAAACTGTGCCAGCACTGCCAGCAGTAGAACATCTACTCCTGTCAACTCTGAGAGGTCGTACAGGAGTAGGTCCCAGACCCCCGCCGCTGAGGACAATGGACGTTGGAATGGTGTTAGAAACTCTGAACATGACCGTTACTGGGCCAGGACACCCAGCGGTAACTCAAGTAGAGGTGCCAGCGGTTCCTCCAGCAGAACCCCCAGCAGGACACCAAGCAGAACCCCGAGTAGGACACCATGCAGGACTCCGAGATCTGTTTCATCAGCTAATGTTTCCCGTAATTGTACTCCTGACATCAGATTGGTAGATAACCTAACATTTGAAGCTGCTACAATCAGCAGCTCGTCGCAGCATTCAAGCCAGTCAAACTCAAACCTTTCTAACCCTACCCTTATATTGAAAGCTGACAAAATGCAACAAACCTACCTCCCACCACCAATATCAGATTTTGATCAGAAGTACATGTTCTACCCGGAACAACAAGAAGACCGAGAAATCAAATATTCACGTAGTGCCGAGTACAATGCTATGAATGTTAATAATGCGTTTCCTTACAATGTGCCAACAGTAGGAGGTGCCGGTGTAAAATTACAACCAAATTTTATATCGAATGTGACAAGAAAGAAAACCCATCCCACTAGAGTGATTCCTAAATCAAATAATCTACTGAACTTAGTTAAAAATAACATAACCGGGATGTCATACGTGACTCCGGGAGCGAAGCCCATGCACGTAATGGTGGGGTCATCAGCACCCACATTTGTGCAGAAGAATTTACAAAACAGCATGATAATGACTGGAGCATTACCTAACACTCAAGTGCATGTGGAAGCCAAGGCAGTTCCGTTAGTTCAAAACCACTTCAACCAGCTGGGTTCTAACTCATTCACTCCGGGCACTACAGTGGTCACTCAGAACTCGCAGTACTTTTATCAGGAGATGGTGCAGAACATTGACCCCAAGACGTTTATTCCCAGTATGCCTGCAGTGTTTACAGGTCATGAAAATGTGACGAACGTGGCTCAAACTAGCTCAATGTACCAGAATGTGATGCTTGTGGATCAATATGGTAACGCTTCCTGCATGTATGCAACACCGCAGCAGATTATACCTAAATGTGGCCCTCAAATGTTCCCTGAACCCACACTTATAACTAATGCACAAAAACCTGGACCCAACTTGAATGATAACAACAAAACTTTGATAATCGAAGTTGGTCCTATGATGCCTAAAGCGCCAACTTCCATGTCTGTCCCTAGTTTTACACTACCAAAGGCTGAGGCTCCCAATATTACTATAACTGAAAAGATTGATGTACAAACTGAAGCCCCAGGCGCAACTAAAGGCCTTAAAATTCTTAGCAACATTAAGGTTGAAGTTCCAGTACAACACAATAAGAATATGATCAACACTGTCATGGACCTGACAGGTTCCAACGACCCTGAAGACCTAGATAGATCAACGACTCCCGAGAAAATCTTACCTGCCATAGGTATAAGTAAGCGAAAATCATCACATGATTTCACTCAACCTTCAACGAGCAGAAGCGACAGCTCTCTTTCTTTTGCTGAACTGAAAAAAATTGCAAGCCCCACCCCAAACAAAGACTCGTCTAGCAAAGCTAGTAGTGCAGACAATAAACTAGATATGGACTGTGGAGATAGCTGTCCAGTACCAGATCTAATATGCAATGAGAAACCTTCCATATCGCCCATCAGCGAGTTGTCGGAGAGCGGAGACAACTCTACCGATCGCACTTCTATATCTCCAAACCTTCAAGTTAAGAAAATTTGCAAAAATGTAGATAGTAGAGAAAAGAATATTCAATTGCCAATGAAACACTATAGGAATACGCCACTAAGACTGAATAACATTTTCGTGAAGAAAAATAAAAAAGTATTGCAGATAAAGAATTCGAAATCGACCTCAGTCAGCGGTTCGAGCAGGCAGGAGAGCGAGCCCATGCCGTGCTCGTCCAAGAGTATAGCGACCGTGAGCTTCAGCAATCAAGTGCAGAGGACAGAACATAAACCTAAGTCCACTTTGAAGACCATTTCAATAGAAGAGATCAGGGAGAGGGACGGACTGGCGGGGTTTGGCTCAAATCAGTCCGAGGATGTAAAGCCTCAATTGCGGGAAAAGACGAGTACAGTCCGTCCGGAGGTCGTGCAAGTGAAGGAGGAGCTCAGTTCCAGTAACGAGGGAGCGTTCAGCAACCAAGGTCGCCCCGACGACATGGCGGCGCTGAACCCGCTGCGGCCGATCAACGTCGTCAGCTACGGGAACATATCGCCGCGAGACTTCGACGAGGAGTCGAGCCACAAGGAGCTCCTGGACCTCGAAGGCGCCGGCAAGACCAAGCAGTTCGTCAGCATGATCAACGAGAACTACTTCGGGGACAACATCTACGCGGACTACTTCACTCCGGACCGGGTGGAGGCGTTCGACGACAAAGGGCCGACGGTGTTCAAGGATGGCGCTAAGGAGGCGTTCTCGTGCAGCATTTGGGGCGAGCCGTCGACGAAGGAGAACGAGTTCGTGCTGCCGAACTTCATCCACGAGAGCTACAAGATCGCGGAGAGCGGGGTGGACTACGAGGGGGACAGGGAGCAGGCGCCAGGGGACAGGGACTGCAAGGCGGACGTGCTGAGCGAGGGCCGCAGCGAGGGGGAGCCTCCTCTGAACATCTGCGCGGACGAGCGCATGCCGCCGCGCGGGGAGCTCAGCGGACAGGAGAGCAACGGGGACATGGAGTCATCCTGGAATGGGGCCTACTCGGCGGCGACGCCGGCGGAGCCCTACGACCTGATGGCGCGTGAGAGCTGGGTCTCCGACGGATCCGAGCTCGACGTCACTGAAAAACGGGAAACCCTAGAGGAGCTCCCCCTGTTCCCCGCGCGGCGCCGGCCCTGCGCCTTCGCCGCGCGCGCCATCAAGGCGGAGGCGCTGGAGGAGCCCGGCCTGGCCGTCGCAGCTAACATCCTGTCCCTGGACACGAAGGACGCGTTAGCCTCCAGCATCCTGCAAGCGTACGAGACGATCGAGGGGGCGAAGCCCGGCCTCGACCTGCGGGGGCTCCTGGCGCAGGAGACCACGCGCCGGAGGAGGGACTTCGTATGCCCCACTTGCAAAGTGGACCAGCGGACGGAGGCGGCGTTCACGGAGCACCTGCGCACGCACCCGCTGGAGTGCCTCAAGTGCGGCAAGTGCTTCTTCCGCCGCGCCAACCTCAAGCTGCATCTCAAGACTCATCTGGGGATCAAGAACTACAAATGCGACATCTGCGAGAAGCGGTTCGTGACGCGGCAGAAGCTGTCGGAGCATCACAACATACACACCGGACGCGCGCCCGTCAAGTGCACGCACTGCGACGACACCTTCCGCCGCTACTCCAACATGGTGCAGCACAGGAACCGGCACCACTTCCACAAGCGCGCCAAGGTGCGCGACTTCGTGTGCCACTGCGGGCTGGTGCTGCACTCGCGCGCCAAGCTGGCCTGGCACCAGGAGACGCACGAGGAGCGGCCCAAGACCTGCGCCCAGTGCGGGGACAAGTTCGTGCACGCCGCGTCCCTCACGCGCCACGTGCGGCGCAAGCACGCCCCGCCCGCCGCGCCGCGCGACGCCCCCTGCCCCGTGTGCCGGCGCCCCTACCCGCGCGCCGGCCTGCGCGCGCACCTGCTCACGCACGCGGGCGCGCGCCCGCACGCCTGCGCCGTGTGCAGCAAGGCCTTCACCACGGCCTGGAACCTGAAGCTGCACCGCTGGACGCACGCCGCGCGCTCCGCCAAGCCGTTCCGCTGCGCGCAGTGCCCCGGCGCCTTCGTGCGGCGCGCGGAGTTCGCGGCGCACATGCGCGCGCACCGCGCCGTGCGCCCCTACACCTGCAACCACTGCGGCCGCCGCTTCATCCGCAAGTACAACTGCCAGCGCCACGTGCGGGAGCACGAGGCCGCCAAGCGCTTCGTGTGCGCCGTGCCCGAGTGCGGCAAGGCCTTCCACCGCGGCTACTACCTGGCCGAGCACATGCGCGTGCACAGCGGCGCGCGGCCCTTCGCCTGCGCCGTCTGCGGCAAGACCTCGGGCAACAAGTCCAACCACAACAAGCACCTCAAGATCCACCACCTGCGCGAGCCGGTCGCGTCCGAGGCCTAG
- Protein Sequence
- MDQLVQCPVCTLFLHNGMSLESHLDTHPKDQVIRALCSIANKNCASTASSRTSTPVNSERSYRSRSQTPAAEDNGRWNGVRNSEHDRYWARTPSGNSSRGASGSSSRTPSRTPSRTPSRTPCRTPRSVSSANVSRNCTPDIRLVDNLTFEAATISSSSQHSSQSNSNLSNPTLILKADKMQQTYLPPPISDFDQKYMFYPEQQEDREIKYSRSAEYNAMNVNNAFPYNVPTVGGAGVKLQPNFISNVTRKKTHPTRVIPKSNNLLNLVKNNITGMSYVTPGAKPMHVMVGSSAPTFVQKNLQNSMIMTGALPNTQVHVEAKAVPLVQNHFNQLGSNSFTPGTTVVTQNSQYFYQEMVQNIDPKTFIPSMPAVFTGHENVTNVAQTSSMYQNVMLVDQYGNASCMYATPQQIIPKCGPQMFPEPTLITNAQKPGPNLNDNNKTLIIEVGPMMPKAPTSMSVPSFTLPKAEAPNITITEKIDVQTEAPGATKGLKILSNIKVEVPVQHNKNMINTVMDLTGSNDPEDLDRSTTPEKILPAIGISKRKSSHDFTQPSTSRSDSSLSFAELKKIASPTPNKDSSSKASSADNKLDMDCGDSCPVPDLICNEKPSISPISELSESGDNSTDRTSISPNLQVKKICKNVDSREKNIQLPMKHYRNTPLRLNNIFVKKNKKVLQIKNSKSTSVSGSSRQESEPMPCSSKSIATVSFSNQVQRTEHKPKSTLKTISIEEIRERDGLAGFGSNQSEDVKPQLREKTSTVRPEVVQVKEELSSSNEGAFSNQGRPDDMAALNPLRPINVVSYGNISPRDFDEESSHKELLDLEGAGKTKQFVSMINENYFGDNIYADYFTPDRVEAFDDKGPTVFKDGAKEAFSCSIWGEPSTKENEFVLPNFIHESYKIAESGVDYEGDREQAPGDRDCKADVLSEGRSEGEPPLNICADERMPPRGELSGQESNGDMESSWNGAYSAATPAEPYDLMARESWVSDGSELDVTEKRETLEELPLFPARRRPCAFAARAIKAEALEEPGLAVAANILSLDTKDALASSILQAYETIEGAKPGLDLRGLLAQETTRRRRDFVCPTCKVDQRTEAAFTEHLRTHPLECLKCGKCFFRRANLKLHLKTHLGIKNYKCDICEKRFVTRQKLSEHHNIHTGRAPVKCTHCDDTFRRYSNMVQHRNRHHFHKRAKVRDFVCHCGLVLHSRAKLAWHQETHEERPKTCAQCGDKFVHAASLTRHVRRKHAPPAAPRDAPCPVCRRPYPRAGLRAHLLTHAGARPHACAVCSKAFTTAWNLKLHRWTHAARSAKPFRCAQCPGAFVRRAEFAAHMRAHRAVRPYTCNHCGRRFIRKYNCQRHVREHEAAKRFVCAVPECGKAFHRGYYLAEHMRVHSGARPFACAVCGKTSGNKSNHNKHLKIHHLREPVASEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056132;
- 90% Identity
- -
- 80% Identity
- -