Hfas009541.1
Basic Information
- Insect
- Hylaea fasciaria
- Gene Symbol
- -
- Assembly
- GCA_905147375.1
- Location
- LR990203.1:9364452-9382744[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00025 0.017 15.7 3.4 1 23 246 268 246 268 0.98 2 13 0.0016 0.11 13.2 10.5 1 23 274 296 274 296 0.95 3 13 0.00035 0.024 15.3 3.0 1 21 302 322 302 323 0.95 4 13 1.2 81 4.1 1.1 8 23 322 337 321 337 0.93 5 13 0.0012 0.081 13.6 7.0 1 23 343 365 343 365 0.99 6 13 9.6e-05 0.0065 17.0 1.4 1 23 371 393 371 393 0.98 7 13 6.3e-06 0.00043 20.8 1.0 1 23 399 421 399 421 0.97 8 13 2.3e-05 0.0016 19.0 0.0 1 23 427 449 427 449 0.98 9 13 5.2e-05 0.0035 17.9 0.4 1 23 454 476 454 476 0.96 10 13 0.34 23 5.9 2.7 3 19 484 500 483 503 0.95 11 13 0.00015 0.01 16.4 0.7 1 23 528 550 528 550 0.97 12 13 0.00023 0.015 15.9 1.5 1 23 613 635 613 635 0.96 13 13 0.0053 0.36 11.5 5.3 5 23 648 666 640 666 0.92
Sequence Information
- Coding Sequence
- ATGTGTATGCCAACGCCTAATAATGTGTCGGGCTTCGGTGGATATTCCTGGGGCTTCACGAGCTCCGCGGATCTTACCAAGGGAGAGGTGGACACTCCAAGCAGTCTCAGCTATACCTTGGGGAGCTCCGTATCTCCGGAAACAACCCTCACGGTGATGTCCCATAAGACACCTCAGGTCCAGGAGAAAGTGGGCACAGTGTCAGTAGCAGTCTCAAACACGGGAGCGCAAGTAACGAGGGTGGTGACCACAGGAACACCTGTGACAGCCAGAAGAGCTATGTTTGTGCTGAATGAAGCACCCACTCATACTATCAATAGGGTCTCTCAACAGAACCAAACTGCTACAATACATACGGCCAACTTGACAAGCAAACCGTTCATGACTCCCATCGGACCGATCCAACTAACGGCAGAAGAATGCAACGAGATACTCATGAAGCGGGCACTGCAAGCGCAAGGCATTGCCACTCCTGTGATTGATGCGTCGCAGCTGAATCACACGTTGCTGAACGGCGGACTGAAGAGTCTGGCTGAAGTGACGACACACCAGAATCAGCAGCAAGACTCGATACAGACAACTACGGTGCAACAACATCACCTGTTGCATGCTAAACAAGAACCAGGGACGGCTAATAATTCACCAAAAACGGTGTATTCACAGACGGAGCTGCTGACTACCAACACGGTGATGACGACCGCGCCGCCCGCGCCGGCGGCCGTCAAGGAACGCCCCTACTCGTGCGACGAGTGCGGCAAATCATTCCTACTGAAACACCATCTCACTACACACGCTAGAGTGCATACTGGTGAGCGGCCGCATGCGTGTACGCACTGCGGCAAAACTTTCGCGCACAAACATTGCCTCAACACGCACCTGCTGTTGCACAGCAACCGCCGCCCCTACCAGTGCGGCGAGTGCAAGAAAACGTTTACACTGAAACACCATCTGCTCTCGCACTCTCGGGCGTTCGCGAGGAAACATTGCCTCAACACGCATCTGCTGCTGCACTCCGCCGAGCGGCCGTACAAGTGCCACGAGTGTAAGATGGCCTTTACGCTGAAGCATCATCTCGTCACGCATTCGCGGGTGCACAGCCGGGACCGGCCCTACGTGTGCACGGAGTGCGGGCGGGGGTTCCCGCTCAACCGGCACCTCGTGACGCACCGCAAGTACCACGCGGGGGAGCGGCCCTTCGTCTGTAACGACTGCGGGGAGAGCTTCGCGCAGAAGGAGCACCTGGTGATGCACAGCCGCTTCCACGGCTCGCTGTCCCCGTTCGTGTGCGGGGACTGCGGCGCCGCCTTCGCGCGCAAGTTCCAGCTGGTGAACCACGGCCGCGTGCACGGCCGCGTGCCGCACGCCTGCCCCGTCTGCGGGAAGGAGTTTCTGCAGAAACGCACGCTCGTCGCGCACATGAAAATTCACACGGGAGACAATGTTGTCGCCTGCCTGGAATGCGGCGAGGCGTTCAAATGCAAGAGCGAACTGCAACAGCACTGCAAATCAGATGACTTTAAACCGCAAATTGTGCAGGTTATAGGTGCAGACGGGCAGATTGTGTCGGAGAAGCCCCCAGGGTACGCCTGCTCCGAGTGTGGATCCTGCTTTAACACTAAGGAGGCGCTGTCGCTGCACGCGCGGCTGCACGCGGGCGACCGCTCGTGCGTGCCGGACCTGTGCGCGCTGACGGCGGCGCTGCAGCCCGAGCTGGTGGCGGCGCAGCACCACGCGCACAATCAGCCCATCCAAATTATATCGTCATCACCGAATAATAACGTAGTACATACGCAAGTTATAGCAACTAACCATCACGTGGCGCCGCGACCCAAGATGCACTTCTGTGGGGAGTGCGGGAAGGGATTCGCGGCTAAACACGGCTTGCTGGCGCACCAGAAGAGGCACCCGGACGGCGGCTGCACGCTGCGCACGCACGTGTGCGACTGCGGGAAGGCCTTCTTCCAGAAGAACCACCTCATGCTGCACCAGCGCCAGCACATGGACTTGCCCAACAGAAACGTGAACCGGTCGGGGCAGGTGATCGGCAACCAGATAGTGGTGGGCGGCGTGGCGCGGCGGCTGGTGGCGCCGCACCTGCAGCTGCTGGCGCGGGACGGGAAGCCGCTGGGCGCGGGCGGCAAGCACCTGGCGCACCGACACCACACCGCCAGCGGTGACGTGAAAGAGGTCGGCGGCCTGGTGCTGTCGGCGGGCCGCGGGCCCAGCCTCATCAAGTACGAGATATCGATACCGCCGCAAAACTCGGTCGTCCAAGTGCAGCAACTCGACTGA
- Protein Sequence
- MCMPTPNNVSGFGGYSWGFTSSADLTKGEVDTPSSLSYTLGSSVSPETTLTVMSHKTPQVQEKVGTVSVAVSNTGAQVTRVVTTGTPVTARRAMFVLNEAPTHTINRVSQQNQTATIHTANLTSKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGGLKSLAEVTTHQNQQQDSIQTTTVQQHHLLHAKQEPGTANNSPKTVYSQTELLTTNTVMTTAPPAPAAVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHACTHCGKTFAHKHCLNTHLLLHSNRRPYQCGECKKTFTLKHHLLSHSRAFARKHCLNTHLLLHSAERPYKCHECKMAFTLKHHLVTHSRVHSRDRPYVCTECGRGFPLNRHLVTHRKYHAGERPFVCNDCGESFAQKEHLVMHSRFHGSLSPFVCGDCGAAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGDNVVACLECGEAFKCKSELQQHCKSDDFKPQIVQVIGADGQIVSEKPPGYACSECGSCFNTKEALSLHARLHAGDRSCVPDLCALTAALQPELVAAQHHAHNQPIQIISSSPNNNVVHTQVIATNHHVAPRPKMHFCGECGKGFAAKHGLLAHQKRHPDGGCTLRTHVCDCGKAFFQKNHLMLHQRQHMDLPNRNVNRSGQVIGNQIVVGGVARRLVAPHLQLLARDGKPLGAGGKHLAHRHHTASGDVKEVGGLVLSAGRGPSLIKYEISIPPQNSVVQVQQLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00650261;
- 90% Identity
- -
- 80% Identity
- -