Hfas015556.1
Basic Information
- Insect
- Hylaea fasciaria
- Gene Symbol
- -
- Assembly
- GCA_905147375.1
- Location
- LR990205.1:11222208-11227913[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0049 0.33 11.7 1.2 1 22 46 67 46 67 0.96 2 22 0.00055 0.037 14.7 0.3 1 23 86 108 86 108 0.96 3 22 2.9 1.9e+02 2.9 1.2 5 23 116 135 113 135 0.94 4 22 0.017 1.1 10.0 0.1 1 23 227 249 227 249 0.97 5 22 0.0054 0.37 11.5 0.2 1 23 254 276 254 276 0.97 6 22 4.6e-05 0.0031 18.0 0.6 1 23 282 304 282 304 0.98 7 22 9e-05 0.0061 17.1 0.5 1 23 310 332 310 332 0.97 8 22 0.00019 0.013 16.1 2.2 1 23 338 360 338 360 0.98 9 22 3.5e-07 2.4e-05 24.7 2.0 1 23 366 388 366 388 0.98 10 22 5e-05 0.0034 17.9 3.2 1 23 394 416 394 416 0.97 11 22 0.002 0.13 12.9 0.4 2 23 422 444 421 444 0.91 12 22 6.8e-05 0.0046 17.5 2.2 1 23 453 476 453 476 0.96 13 22 0.12 8 7.3 0.4 2 23 484 505 484 505 0.94 14 22 5.8e-05 0.0039 17.7 2.8 2 23 512 533 509 533 0.92 15 22 0.12 8.3 7.3 2.0 1 23 541 564 541 564 0.92 16 22 0.0029 0.19 12.4 0.7 3 20 569 586 567 588 0.92 17 22 0.0024 0.16 12.6 1.3 3 23 593 613 592 613 0.94 18 22 0.00081 0.055 14.1 0.4 1 23 622 645 622 645 0.96 19 22 0.0041 0.27 11.9 0.6 1 20 650 669 650 669 0.94 20 22 0.01 0.7 10.6 0.4 2 21 678 697 677 698 0.94 21 22 0.00033 0.022 15.4 0.0 2 23 706 727 705 727 0.94 22 22 0.011 0.77 10.5 0.1 2 23 733 755 732 755 0.93
Sequence Information
- Coding Sequence
- ATGGTTGCCAGACAGCAAAGCAACCAGAAATATGTATACAATAAGGAATCAAAACTCATCAAGCATTTCCAATGGGATCAGTTGCAGATAGAACATATCCAGAGTTCATACGTCAAGTTGGAACGGGGCACGGTGTTTACATGTCAGATGTGCACAAGAGGGTTCCTTAACCGTGATGATTTAAAAAATCATCAGAAAAAGTATTATAAAAGACAAAGTAATTCAAGATCCGACAATAATCAATTTGTAAAACCATACAAATGTGAAGAGTGCAACACAAGATTTGTGGAAGAAAGTACGCTCCTTACTCACTCCATAGTCCACAAGCCTTTCCCGCACATTTGCGAGTGCGGTATCGGATACTTCAAGAAGTGCGACCTGGATGCTCACCGGAGATTGGTCCATCCGATGTTCAAACCTGTTCATTCCATAGTACCTAAAGTCAAACAAGAGTTCACCGGCAACTCAAAACCAAAATATAGAACGGATTCAGAAGCCGAGGATGCGGAAGAACCTGAAGATGACCATAATTATCAGCCAACTAGTAAATCAGGGCCGAGATTAAAGGCTAAGCTCACTTACAAGCAGCCCAATAAGAAATCGAAGAAATCATCTAAAAGTAGACAATCATATAGGGGGAACAAAGAAAATCTTGTTATTAAAGACGAGTCGGGGCTGTACAAATGCCCAGCCTGTGCAAAAACATACACAAGTAGAAATGGAATCGATGAACACATGAACGAGCACACTGAAACCAAATTCAATTGTGATGAATGCCAAAAAGTGTTATCAAACATTTGGGGCTTGATACTCCATAAGCGTCAACATGCGGGCGTAAAAAATTTCTCATGCAGTGTTTGTAATAGAGGTTTCAATGCAAAGAACAATATGGTGATACACATGAGAACTCATACGGGTGAGAAACCGTACGCCTGTCACTTATGCCCCAAGAAGTTTAGTCAGGGAGGCGCACTCACATTGCATTTAATTAGACATTCAGGTGTGAGAAATTATGAGTGTGGGAAGTGTAAGAAGCGTTTTTTTCACCTCGGTGAACTGACATTGCATGAACGTATCCACACGGGGGTGAAGCCTTATGAATGTAAAACGTGCGGGAAGTGCTTCTCTGACCCTTCTGCGTATAAACGGCATACGATCATCCACACCGGTGAGAAGCCGCACAAGTGCAAACTCTGCCCGAAAGCGTTCTGCGACCCTGCCGCACTGTTCCGGCATAACCGGCAGCACCAAGGCTACTCCGTCCCGTGCGCACAATGCGAGAAAACGTTCAAGAGTCGCGCGTCGATGCTTCGCCACGTCACACAAACTCACAAACCGATAAGGGAAGAAAATAAATTCGAATGCGATCACTGCAGCAAAAAGTTTATGTTTAAATCTTATTTGGCAATACACATGCAGTTGGTGCATCTGAAAACTGTGAAAAAAGCCGAATGTGAGATGTGTAACAAAACCATGACAGCGAGCATGATGAAGAGGCACATACAAGAAGTGCATCTGAGAGCTTATGAATGTGAATGCGAGATATGTGGACATGTGTGTAGCAATAACGCTGCAATGAAGTCACATATGAGAGTGCACGACAAATTAAGAGAGAGAAATCACGAATGTGACTATTGCCATGCGAGCTTCCTTTACAAGGATGACGTGTTTAAACACATAGTAAACATACATTTGGGGATAGCGTGCAAAACATGCAACAAAACCTTCCCGACGACTCAGAGCTTGAGACTTCACAAAACCAAAGGCTGTGAAATATGCTCCGTGTGCCGCATGGCTTTCAAAACTAAAACTAAACTGGAACGCCACTTCGTGCGTCACTTGCCTAAGAATCAACGCCAACTATTTGAATGTGATGACTGCGGCAAACATTATCCGCATATAGAGGCTATACGCAATCATATAGCGAGGGTTCACATAGTGAAACGTTTTACTTGTGACCACTGCCAAGAGACGTTTACCAAAAGAGGATTGATTAGGGACCACATTTGGGGGAAGCATATGATTAGCCTGTACTGCAACGTTTGCTTGAAGAGGTTCTATAACGAGGGGGGATTCAACCGGCACAAGCGAGGTGGCTGCCGGCTGAAACGGCTGCCCTGTGGCATATGCGAGCTGGTGTTCACGTCGAGTACAAACCTCGCAAGCCACCTTATAGCGCACGGCCCGAAGAGGATGGAATGTGACGTGTGCGGCTACAAATCTAAGTATAGGAAAAGTGTGGAAAGACATATTGCTTTGGTGCACGGTTTTAAGTACAAGAACAGCTGTTTTCGACGCAACCCCAATAAGGATAAAGGTGAGTTCAGAATGAGTGCGAGCCTGCGTTGCCGCGCCGCGCCGGCCGCGCCGCTCAATACGCGCGCGCCGTGCGTCCCGCGCGGCATCGACCGACCCCTCCTGCGATGCCCCCAGTATTAA
- Protein Sequence
- MVARQQSNQKYVYNKESKLIKHFQWDQLQIEHIQSSYVKLERGTVFTCQMCTRGFLNRDDLKNHQKKYYKRQSNSRSDNNQFVKPYKCEECNTRFVEESTLLTHSIVHKPFPHICECGIGYFKKCDLDAHRRLVHPMFKPVHSIVPKVKQEFTGNSKPKYRTDSEAEDAEEPEDDHNYQPTSKSGPRLKAKLTYKQPNKKSKKSSKSRQSYRGNKENLVIKDESGLYKCPACAKTYTSRNGIDEHMNEHTETKFNCDECQKVLSNIWGLILHKRQHAGVKNFSCSVCNRGFNAKNNMVIHMRTHTGEKPYACHLCPKKFSQGGALTLHLIRHSGVRNYECGKCKKRFFHLGELTLHERIHTGVKPYECKTCGKCFSDPSAYKRHTIIHTGEKPHKCKLCPKAFCDPAALFRHNRQHQGYSVPCAQCEKTFKSRASMLRHVTQTHKPIREENKFECDHCSKKFMFKSYLAIHMQLVHLKTVKKAECEMCNKTMTASMMKRHIQEVHLRAYECECEICGHVCSNNAAMKSHMRVHDKLRERNHECDYCHASFLYKDDVFKHIVNIHLGIACKTCNKTFPTTQSLRLHKTKGCEICSVCRMAFKTKTKLERHFVRHLPKNQRQLFECDDCGKHYPHIEAIRNHIARVHIVKRFTCDHCQETFTKRGLIRDHIWGKHMISLYCNVCLKRFYNEGGFNRHKRGGCRLKRLPCGICELVFTSSTNLASHLIAHGPKRMECDVCGYKSKYRKSVERHIALVHGFKYKNSCFRRNPNKDKGEFRMSASLRCRAAPAAPLNTRAPCVPRGIDRPLLRCPQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -