Basic Information

Gene Symbol
stc
Assembly
GCA_963513945.1
Location
OY740717.1:42320874-42329841[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 3.3e+04 -4.2 1.6 15 19 477 481 476 481 0.81
2 13 0.017 2.8e+02 2.5 0.6 4 10 510 516 509 516 0.96
3 13 6e-06 0.1 13.5 16.4 4 19 524 539 522 539 0.94
4 13 2.8e-05 0.47 11.4 13.0 3 19 577 593 575 593 0.91
5 13 3.3e-07 0.0055 17.6 17.7 1 19 633 651 633 651 0.98
6 13 3.2e-05 0.54 11.2 13.3 4 18 699 713 692 714 0.86
7 13 0.0075 1.2e+02 3.6 9.3 1 11 754 764 754 765 0.96
8 13 2 3.3e+04 -4.6 1.1 4 10 769 775 769 775 0.58
9 13 5.2e-10 8.6e-06 26.5 15.5 1 18 781 798 781 799 0.97
10 13 1.8 3.1e+04 -4.0 0.9 6 10 828 832 828 833 0.81
11 13 2 3.3e+04 -7.3 9.9 10 18 846 855 835 856 0.79
12 13 4.3e-08 0.00071 20.4 14.3 1 17 892 908 892 918 0.94
13 13 4.8e-07 0.008 17.0 14.0 1 19 925 944 925 944 0.96

Sequence Information

Coding Sequence
ATGTCCTCAAAAATTGCTTTCTATAGTCCAAATTCACCTTCCATGTATTTGAATCCTGCAAGCGCTTTATTTGCCTTCAACAACTTCCAACAGAATTCCAACAACAATAGCACTGTATTCTCGGATGGCTTACAAAACTATGACGTCACTGCTGCATTGGCGATCGGCTCAAGCAGCTCGACTTCAGTGCCCAACAATCCAAATTATTACGATAACAACTCGTACGGTTTGAATTTAAATACTGCAAATGGTGTAGGCGCTGGTGGCATTGGAGATGCCACCACTTATTATGCCAATCCTTTTGCGACGGGTTTTGATTTTTCGGCCACAAAACTGCAGGTTACAGCGCCTGAATTTGTGCCACGTTTCGATAAACTTTCGTTGAACGAAAGTAACCAACAGCAGCAGAGAACGCAATTGGAAAATGGTGGGTCGGCCGGAGGCCTGgactataaacaaataaatagagTCCCCTCTGGTTATGAAGCACCAGCAAACGATTTCGGCAACAGAGAAATAGAGGCGCCACATGGTGTGAACGAGAAATCTAACGCCGATACCAGTTTTGAAAAGGAGGAGAAACGCCAACAACATCGGCGCAATAATCggcagaacaacaacaaacaggATAAAGAGAATAACAAGCGTAACAATAATCGCATGGAAAAGAATATGGAAAGATTTTCGAGGAATTTGCAGGAGAAAAGTCTGAACAATGATTCCGCCTCGAACTCGAATTCGTCGACGCCGTCGTTAACAATGAACGGCGCCAGCGGCAGTGGGGGAGGCCAGCAACCACAACAACTACATACAGGTGTACAAAAGTCTACGGGTGCCTTTAGTAAATCACAAAATCCTAAGAATGGGGATAGGTCCAGAAATAGCAATGGCGGTGGTGGGGGTTTCGAAAATCAAGATAATCATGACAAATctgaaaaatacaacaacaagcGCTATCAAAACGGCCGACGTTCTCAGGACTTTGGCGTTGAGCGGGAGGAACGTTTCGAGCGTTATGCAGATCGCGGTGAACGTCACCAAGAGAGAGGTCGCAATCAACGCAACGATTACCATCAGCGCTACGACAATTATCGCAGCAACAAGCGTCGCGACGATTGGAATCGTAATCGTGACCGCATCAATGGATTCCGAGTGGAAGAGAAATATTCTCAGGATAATGGCAAAGAAAGTCCACTGCCCAGCCCCGAAAAGAAATCCCCTAAGAAGGTGTATCCCGAAAATGAGAAACTTTCTCAGAGAGAAAAGTTGATCAGAGACATCGAGTGCCGGCGTTTGGAGTGTTTGGTGTGTGTTGAAGCCATCAAGGCCCATCAGAGTGTATGGTCGTGTCACAACTGCTATCACATTCTCCACTTACAATGCATCATAAAATGGGCTTCTTCTTCGAAGTCAGACGATGGCTGGCGTTGTCCAGCCTGTCAAAATGTGGAGAAAGATGTTCCCCGGGACTACtactgtttctgcggcaaactAAAGAATCCTCCCAACAATCGCCAAGACATAGCTCACACCTGTGGCGAAGTTTGTGCCCGTGTAGAAGGCTGTCCACATGCCTGCACCCTGCTCTGCCATCCGGGTCCATGTCCACCCTGCCAGGCTCAGGTCAAGCGTGAATGTGGTTGTGGAAAAACTTCGAAAACCATGCAGTGCTGCATCAAAGAAACCATTGAATGTGATTCTGCCTGTGAGAAATTGTTGAATTGCGAACTGCACGTCTGTCCGGAGAAATGCCACGAGGGCAAGTGTCCGGCCTGCAAAGAAAAAGTAGATCAGAAATGTCATTGCACCAAAAATGACCGCCAGGTGACGTGCACTCGAGAATCCCATGACAAACATGTCTACTCTTGCGGCAAACCATGTGGCAAAGATTTGACTTGCGGCAATCATAAATGCAAAGATTGTTGCCATGCCGGTGAGTGTAAGTCGTGTAAAATGAGCCCCGACACCGTGACCTCATGTCCCTGTGGCAAAATGCCTATAGTTCCCGAGCAGCGCAAATCTTGTCTAGATCCGGTGCCAGTTTGTGAAGGCGTCTGTGGTAGAACACTGAAATGCGGCAAAGCCACAAATCCCCATCATTGTACGTTCAAATGTCATCTGGGCAATTGTCCACCTTGCAACAAGCAGACAGCGGTCAAGTGTCGTTGTGGTCACATGGATCAAATGATCAAATGCCGTCAACTATCCACTCGCGCTGACGATGCTAGATGTAAAAAACGTTGCACAAAGAAACGTTCCTGTGGCAAGCACAAATGCAATCAAGAATGTTGCATTGACATTGATCACTTCTGTCCATTGCCCTGTAACTATACCCTATCGTGTGGCAAGCACAAATGCGATCAGCCCTGCCATCGCGGCAATTGCCCGCCCTGCTATCGTTCCTCCTTTGAGGAACTCTTCTGTGAATGCGGTGCTGAAGTCATCTATCCTCCGGTACCGTGCGGTACAAAGCGACCGGTATGCAAGCGACCGTGTTCGCGTAAGCACCCATGTGATCATGCTCCCCAGCATAACTGCCATTCATCGGCCACCTGTCCGCCCTGCATGATGTTCACCACCAAATGGTGTTTCGGTCAACATGAACAACGCAAAACCATACCATGCTCTCAGCAAAGTTTCTCGTGCGGCTTAGCCTGCAATAAGCCATTGCCGTGTGGACGCCACAAATGCATTCGGACTTGTCACGAGGGCCCGTGTCAAACAACACCGGGTGAGATCTGTAAACAAAGTTGTACAACTGCCAGAGCCGTTTGTGGGCATAAATGTATGGCTCCTTGTCATAATGGCGACTGCCCGGAGACGCCATGCAAAGAAATGGTCGAAGTACAATGCGAATGTGGTAATCGCAAACAAATGCGCACATGCGCCGAATTGTCTCGTGAATTCAGTCGTATTGCCACCGCTCAATTGGCCTCATCCATGGCCGAAATGCAGCGTGGCAATTACATGGAACTTTCGGAAATTTTAGCTCCAGTCAAACTATCCAGTAAATCTAACAAAACGCTCGATTGCAATGATGAATGCCGTGTGCTCGAACGCAATCGTCGCCTGGCCATCGGCTTGCAAATACGCAATCCCGATTTGCCACAGAAGCTATTGACAAAATATTCCGATTTCATACGTAATTTCGCAAAACGTGATCCGACTCTCGTGAAGTCCATACATGATGCTCTAACCACACTGGTCAAGCTGGCCAAGGAGAGTAAGCAAAAATCGCGCTCGCATTCGTTTCCCACAATGAATCGTGAGAAACGCCAGCTGGTTCATGAAATGTGCGAAATGTTTGGCGTAGAATCGGTGGCCTATGACGCTGAACCAAATCGTAATGTTGTGGCCACTGCGTTTAAAGATAGATCTTGGCTTCCTGCTACCAGCATCATGGAGGTAATGGCTCGTGAATCTGGCCAAAGGCGTGTGCCAGTGCCAAGTAATAATGCCTGGGGCCTCAAGAGATAG
Protein Sequence
MSSKIAFYSPNSPSMYLNPASALFAFNNFQQNSNNNSTVFSDGLQNYDVTAALAIGSSSSTSVPNNPNYYDNNSYGLNLNTANGVGAGGIGDATTYYANPFATGFDFSATKLQVTAPEFVPRFDKLSLNESNQQQQRTQLENGGSAGGLDYKQINRVPSGYEAPANDFGNREIEAPHGVNEKSNADTSFEKEEKRQQHRRNNRQNNNKQDKENNKRNNNRMEKNMERFSRNLQEKSLNNDSASNSNSSTPSLTMNGASGSGGGQQPQQLHTGVQKSTGAFSKSQNPKNGDRSRNSNGGGGGFENQDNHDKSEKYNNKRYQNGRRSQDFGVEREERFERYADRGERHQERGRNQRNDYHQRYDNYRSNKRRDDWNRNRDRINGFRVEEKYSQDNGKESPLPSPEKKSPKKVYPENEKLSQREKLIRDIECRRLECLVCVEAIKAHQSVWSCHNCYHILHLQCIIKWASSSKSDDGWRCPACQNVEKDVPRDYYCFCGKLKNPPNNRQDIAHTCGEVCARVEGCPHACTLLCHPGPCPPCQAQVKRECGCGKTSKTMQCCIKETIECDSACEKLLNCELHVCPEKCHEGKCPACKEKVDQKCHCTKNDRQVTCTRESHDKHVYSCGKPCGKDLTCGNHKCKDCCHAGECKSCKMSPDTVTSCPCGKMPIVPEQRKSCLDPVPVCEGVCGRTLKCGKATNPHHCTFKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCTKKRSCGKHKCNQECCIDIDHFCPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELFCECGAEVIYPPVPCGTKRPVCKRPCSRKHPCDHAPQHNCHSSATCPPCMMFTTKWCFGQHEQRKTIPCSQQSFSCGLACNKPLPCGRHKCIRTCHEGPCQTTPGEICKQSCTTARAVCGHKCMAPCHNGDCPETPCKEMVEVQCECGNRKQMRTCAELSREFSRIATAQLASSMAEMQRGNYMELSEILAPVKLSSKSNKTLDCNDECRVLERNRRLAIGLQIRNPDLPQKLLTKYSDFIRNFAKRDPTLVKSIHDALTTLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAFKDRSWLPATSIMEVMARESGQRRVPVPSNNAWGLKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01375412;
90% Identity
iTF_00817099;
80% Identity
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