Basic Information

Insect: Hydrotaea diabolus
Gene Symbol: Clamp
Assembly: GCA_963513945.1
Location: OY740717.1:25531626-25533910[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.4e-05 0.002 19.3 3.3 1 23 141 163 141 163 0.99

2 7 1.2e-05 0.0011 20.2 1.0 1 23 452 474 452 474 0.98

3 7 7.4e-06 0.00064 20.9 0.1 1 23 480 502 480 502 0.99

4 7 5e-06 0.00043 21.4 3.2 1 23 508 530 508 530 0.99

5 7 2.9e-06 0.00025 22.2 0.4 1 23 536 558 536 558 0.98

6 7 2.4e-06 0.00021 22.4 0.4 1 23 564 586 564 586 0.98

7 7 0.00014 0.012 16.9 0.2 1 23 592 614 592 614 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.4e-05	0.002	19.3	3.3	1	23	141	163	141	163	0.99
2	7	1.2e-05	0.0011	20.2	1.0	1	23	452	474	452	474	0.98
3	7	7.4e-06	0.00064	20.9	0.1	1	23	480	502	480	502	0.99
4	7	5e-06	0.00043	21.4	3.2	1	23	508	530	508	530	0.99
5	7	2.9e-06	0.00025	22.2	0.4	1	23	536	558	536	558	0.98
6	7	2.4e-06	0.00021	22.4	0.4	1	23	564	586	564	586	0.98
7	7	0.00014	0.012	16.9	0.2	1	23	592	614	592	614	0.96

Sequence Information

Coding Sequence: ATGATGgaagatataacaaaaaatataatatttacaaATGCTCTTGGAGCAAATGTTCAGCCGACAACCATACAATACCAAACAGCAGATGGGACCATACTCAAGCAGCCAAAAATCGAAGGGCAAAAGGAACAGCAGCCAACATTTTACTACACCACAACAAATGGAAATGCTACCACCGTTAACTTGGCTCAACTCACCACCGATGACAATAAGACCTGCTACATCGCCCAACCAGTGGGAGGCTATAACTATGCCCTGGTCAATGGCATGCagttaaatcaattaaatcaagGCGGAACCATTGGTATAGCCACCCTAGATCCTCAGGGAAGATTACAAATTGTCAATCAAAATAAACCCTTAGCAACTTCTTTACAGACTATTTCTCCCATACAGAATACCATCTCGAACATTAGCTTCAAATGTGATGTGTGCGGTTTGATGTTCTCCCATTTGGCTTTGTTAAATCATCACAAGCGTAGTCATACCCAAGATGGCAGCGATCAGCATCAGGGTCAACAAGAAACTATAGCGCTGGTCAATGCCCAGGGTCTGGTGCAAACGCAGAATATTATCACCGAGAATGGCCAAATGGGTCAGATACAAATAGTGGCGACGGAGGCACTGGAACCGGCCACATCCGTACTACAACAGACCACGCAACAGTCAATGCAGCAAcagcatcagcagcaacaacaacaacagcaacaacaccaacagcagcagcagcagcaacagcagcagcagcaacaacagcagcaaaacaACGAATCGGTGGGGCAATCCTCGGTGGGTAAACCCCTTAAACTGGAACAAAGTAAATGTCAAACATGTGGCAATCAAATACTGCAACCCGTCAAGCGTAAAGGGCCCAAGATTATCCGCTGCGATTCGTGCCTCCAAAACGAACAAGCAGCCATGGCCGCACATCAGGTGCAGCCCACACAGATCTATGTTGCGCCCGATGGCGATATCAAGTTCGAAATGAATGACTTGGCCAGCGGTAATTCAGAGTCGTCGATGGATTCTCTAGGCGCTACGACTATGATACAACAACCCGTACAAATAATATCGACCAACGCTCAAGGACAGCAACAGATTCAACTGGTGACAACACAACAGCCAGCTCCCACCTCATCACATGGCAATGGTACGGTATCCGGTGTCAGCTTAAAACGAGAACCTTGTCCATCCTCGCACTCGCCCAAGAAGAAATGCTCATCGGCCAAGATAACAAAATGCAACAAGTGCAATGGTTCGGGTGTGGTGTATGTTGGATCGGGAGCGCCCGCCTCAAAGCAGCAGAGCCCAAACGCAGTGTCCGCAATAAAGACAGAGAATCCCAAACCATTTACATGCAATATCTGTGGTGGAACGTTCTCGCGCTATTCCAGTCTGTGGTCCCACAAGAAACTGCATAGTGGCGAGAAGAACTACAAGTGTACCATCTGTGGACTGGCCTTTGCCAAGGCGgtatatttgaaaaatcatgCACGTATTCATACCGGCGAGAAACCCTACAAATGTCAAACATGTGGTATGCAATTCTCACAATCGCCGCATTTAAAGAATCACGAACGCACCCATAGCGGCGAGCGGCCCTACGTGTGTGAGGTGTGCGACAAAGGTTTTGCCCGTCATGCCACTCTATGGAATCATCGGCGCATACACACCGGAGAGAAACCGTACAAATGTGAAATATGTGGTTCAGCGTTCTCTCAAGCGGCTCATCTCAAGAATCATGCCAAAGTACACTCGGGCGAAAAACCCTTCAAATGTGATATCTGTTCAGCCGCCTTTGCCGATCGCTTTGCGCTGAAGAGACATCGGGGCATTCATGAAAAGTATGGCCAAACGGCACCGCGGCAACCAGCTCAAACGCCGGGCTCGCAACACCAAAATCAACAGGATGCCGAACAAATATTGCATAAACAGGAAATGCCCGATATGGATGATGATGCCCAGCATGAAGTTGTTATAACTGGGTTATAG
Protein Sequence: MMEDITKNIIFTNALGANVQPTTIQYQTADGTILKQPKIEGQKEQQPTFYYTTTNGNATTVNLAQLTTDDNKTCYIAQPVGGYNYALVNGMQLNQLNQGGTIGIATLDPQGRLQIVNQNKPLATSLQTISPIQNTISNISFKCDVCGLMFSHLALLNHHKRSHTQDGSDQHQGQQETIALVNAQGLVQTQNIITENGQMGQIQIVATEALEPATSVLQQTTQQSMQQQHQQQQQQQQQHQQQQQQQQQQQQQQQQNNESVGQSSVGKPLKLEQSKCQTCGNQILQPVKRKGPKIIRCDSCLQNEQAAMAAHQVQPTQIYVAPDGDIKFEMNDLASGNSESSMDSLGATTMIQQPVQIISTNAQGQQQIQLVTTQQPAPTSSHGNGTVSGVSLKREPCPSSHSPKKKCSSAKITKCNKCNGSGVVYVGSGAPASKQQSPNAVSAIKTENPKPFTCNICGGTFSRYSSLWSHKKLHSGEKNYKCTICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPFKCDICSAAFADRFALKRHRGIHEKYGQTAPRQPAQTPGSQHQNQQDAEQILHKQEMPDMDDDAQHEVVITGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01175569;
90% Identity: iTF_00816804;
80% Identity: -