Hdia018918.1
Basic Information
- Insect
- Hydrotaea diabolus
- Gene Symbol
- -
- Assembly
- GCA_963513945.1
- Location
- OY740719.1:8524904-8526890[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00022 0.019 16.2 0.8 3 23 214 234 213 234 0.97 2 11 0.0003 0.026 15.8 0.4 2 23 250 272 250 272 0.92 3 11 1.2e-05 0.001 20.2 3.1 1 23 278 301 278 301 0.96 4 11 6.2e-06 0.00053 21.1 1.5 1 23 308 330 308 330 0.98 5 11 0.069 5.9 8.4 1.4 1 23 335 358 335 358 0.93 6 11 0.039 3.3 9.2 3.5 1 23 384 407 384 407 0.94 7 11 3.7e-06 0.00032 21.8 1.4 1 23 414 436 414 436 0.98 8 11 0.0002 0.017 16.4 1.6 1 23 442 465 442 465 0.95 9 11 1.4e-05 0.0012 20.0 2.7 1 23 500 523 500 523 0.97 10 11 2e-05 0.0017 19.5 0.8 1 23 528 550 528 550 0.98 11 11 0.00011 0.0097 17.2 1.2 2 21 581 600 580 601 0.92
Sequence Information
- Coding Sequence
- ATGTCTCAGTCAACGATTTGCCGTCTGTGCTTCAACGCATGCGTTGACTTTAAACGTCTTTGCCAGGCCAACGAATTGTACGAACTGACGCTCGCCTATTTCCATCCCAAGATTGTGGACATGGAAGCGGCCAAACATCTCGACGCCGTGTGTCTGGAATGCGTGCGTCACATTAATGATTTTCACGATTTCCAGGAAACGATAGGCACGGCTCAAGTGAACCTTCTGGCAGAGCACACCAGAGGGCTGGCAATAAAAACCGAGTTAGATGATGGCATGACAGAAGATTTGCAATGTCCAGTGGGATTTTCCGATTACCTTGTTTCCAATGAGGCGGAAGCTGGCGCTAATGCTATCAAATTCGAAGAAGAAGCCCTGCTGGAGGATTATCAACAGCCAGAAGGCTTTGAGATCATCAGCTTAGATGGCATCGATGCCCAAGCTGAACAGCGTGCAAGAAATGTTAAAATGGAGCAATGCAACAATGACTCCAATGCCACCAACAGTCTAGCCGAAGATACCCTGGATGTGCCTGGTCATAGCGAATGCAGTTCAGATTATGCCGATGAGCTGCTGTTATCTAAAAACGATATGTCAGCATCGGATGATGACACCACCAGCAAAACGTTCCGGCGTGACTGTAAGATTTGTGGCCAGACCACCACCAGAAAGTATGACTTTGTGCTTCACATGAGCCAACACAATTGGCAAACGCAACAGTCGAAAGCCGAATGCCAAACCAAGCCCGAATGTCAAATATGCCACAAGGTGTTCCCCACTAAAGTGGGACTGGCCCAGCACTACAGCGGCACTCATTGTCCTCCGGGCCTGCATCCTTGCAATGAATGTGGCAAGATGTTCAATAAGCGTCGTTATCTACAACAGCACCGACGTAATGTCCACGTTCCACGTCCTAAGCCGCACAAATGTGACACTTGCGGCAAAGCCTTTAGGTTCGCCACCGCATTGAAAAATCATGTTCTCACACACACGTTAAACAGCTACGCGTGCGCATTCTGTTCGGTGAAGTTTAAGCATACCAGAAATCTAGTATTGCACACGGTACGCATACATCCCCATGCCGTGGACAGTCCAGAAAATTCAGAGGACGAGACGCTGGGAGAAGGAGCAACAAAAACTGGTGAGACACACGCTTGCCGGGATTGTGGCCGGTCGTTCAATGCCTATTGGTATTACCATCAGCACCGAATGAAGATCCACAGTTCCCAAGCTCAACTGCACACGTGTGAGACTTGCGGTCGGAATTTTATGTCGCCCAGCGAATTGGAGCGACATCGTCTAACGCACACGAAAAAACCCATATACTTGTGCCAGCACTGCCCCATGAAATTCAAGTATCCCATATATTTGGTGCAACACATGAAAAGGGTGCATCCTCATCGCGATACGGTGGGCGAGTATGTGGTCTCCACCGATCGCACAGAAGATAAATCGCTGATTATCACACCGGCACCACCAATACAAGACTACGAAGATTATCCTTGCGAAGTGTGCGGCAAGACTTTTACTGAGTACCGACATAAGCGCCGGCACATGAGGAATGTCCACAGTCCACAGTGTCACACTTGTGACATTTGTGGCAGAGGCTTTACAACCGTGCCttttttgaaaagacatttGGCAACACACGGCCAAAGAGTCGCCGACGACAAAGAGACGGGCGCTTCAACAACCGCCGCAGCTGAAGAATGGATACTGGCAGAAGAGATTGCTGGCCAAACGTGCCATGAGTGTGGCGAAACATTCGAAGACCAAGTTTCGCTCGAACGGCATGAATGTCGCAATAGCGACAGAGCCACTACATCTGGCGTGAGCAATGCTAAATCGGACGCGGCTCGTCCAAAGAGGAGTGTTAAGGGAGCCAAGAAGCGAAAACATAAAGTTTGA
- Protein Sequence
- MSQSTICRLCFNACVDFKRLCQANELYELTLAYFHPKIVDMEAAKHLDAVCLECVRHINDFHDFQETIGTAQVNLLAEHTRGLAIKTELDDGMTEDLQCPVGFSDYLVSNEAEAGANAIKFEEEALLEDYQQPEGFEIISLDGIDAQAEQRARNVKMEQCNNDSNATNSLAEDTLDVPGHSECSSDYADELLLSKNDMSASDDDTTSKTFRRDCKICGQTTTRKYDFVLHMSQHNWQTQQSKAECQTKPECQICHKVFPTKVGLAQHYSGTHCPPGLHPCNECGKMFNKRRYLQQHRRNVHVPRPKPHKCDTCGKAFRFATALKNHVLTHTLNSYACAFCSVKFKHTRNLVLHTVRIHPHAVDSPENSEDETLGEGATKTGETHACRDCGRSFNAYWYYHQHRMKIHSSQAQLHTCETCGRNFMSPSELERHRLTHTKKPIYLCQHCPMKFKYPIYLVQHMKRVHPHRDTVGEYVVSTDRTEDKSLIITPAPPIQDYEDYPCEVCGKTFTEYRHKRRHMRNVHSPQCHTCDICGRGFTTVPFLKRHLATHGQRVADDKETGASTTAAAEEWILAEEIAGQTCHECGETFEDQVSLERHECRNSDRATTSGVSNAKSDAARPKRSVKGAKKRKHKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -