Basic Information

Gene Symbol
-
Assembly
GCA_963513945.1
Location
OY740717.1:204925567-204956835[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 1e-05 0.00089 20.4 1.3 1 23 680 702 680 702 0.97
2 20 0.0002 0.017 16.4 0.5 1 23 708 730 708 730 0.97
3 20 8.2e-05 0.007 17.6 0.4 1 23 736 758 736 758 0.98
4 20 6.6e-06 0.00057 21.0 3.0 1 23 764 786 764 786 0.97
5 20 8.8e-05 0.0076 17.5 4.7 1 23 792 814 792 814 0.99
6 20 0.00016 0.014 16.7 5.7 1 23 820 842 820 842 0.97
7 20 7.6e-07 6.5e-05 24.0 4.3 1 23 848 870 848 870 0.98
8 20 2.8e-07 2.4e-05 25.4 2.4 1 23 876 898 876 898 0.97
9 20 2e-05 0.0017 19.6 5.4 1 23 904 926 904 926 0.97
10 20 3.8e-05 0.0032 18.7 8.4 1 23 932 954 932 954 0.97
11 20 0.00016 0.014 16.7 6.7 1 23 960 982 960 982 0.97
12 20 4.7e-05 0.0041 18.4 6.5 1 23 988 1010 988 1010 0.98
13 20 1.9e-05 0.0016 19.6 4.4 1 23 1016 1038 1016 1038 0.98
14 20 0.0002 0.018 16.4 7.1 1 23 1044 1066 1044 1066 0.98
15 20 4.7e-06 0.00041 21.5 7.7 1 23 1072 1094 1072 1094 0.98
16 20 1.7e-06 0.00015 22.9 7.7 1 23 1100 1122 1100 1122 0.98
17 20 0.00053 0.045 15.1 9.5 1 23 1128 1151 1128 1151 0.95
18 20 0.00044 0.038 15.3 0.5 1 23 1157 1179 1157 1179 0.97
19 20 0.00064 0.055 14.8 4.5 1 23 1189 1211 1189 1211 0.98
20 20 2.3e-05 0.002 19.3 1.6 1 23 1217 1240 1217 1240 0.96

Sequence Information

Coding Sequence
ATGAATGCTACTGATCATGCAACAACTCCCGGTGAGTcaacgacagcagcagcagcacattTGGCAGCAATAATAGCAAATACGGCCCAGGCGAATGGCTATGATCCGCAACACCAACGACATCAGCAACATAATCGACATTCGCCACttcaacaacatcatcatccgGCAGTAGCACATTCGCAATTGAACGAGTCGCGTGGTGGCACTGGAGTAAATGTTGCCCATCACCACCACAACCGCCAATCGCTAACGATAACAGCCAACCAACGATATATGCCGCCAACAACAACGTCTGAAGCTGCGACGACGAgtgttaacaacaacaacagcagcagtgaTCATAATAATAATGGTGGTGCTGGTGTTTTTGGCGATGGTGACATTATTTCCCAATCCCCTTTATCGTTAATAATGTCTACAACGACCTCGCCATCGTCGAAGGTGGCAAATGTAGCAGCTACTACAGCCGCTTCCGATTCTGATACAACATCAACGCCAATGGCAACGTCATATGTTGTTGGCCATAAACAAGCCATGGCTCAACAACAAACTGTAACTGCAACCGCGTCGCCGTCTACTGTTGTCACGGTTACAGGTGTTGCTAACACTAGTCCTGTTGCTGCACCGTCCACGCACGATGATCACCTACAGCATCAACAACATCAGCATCAGCACCAACATCAACAGcaacagcatcatcatcatcatgtcAATCAAACCACCTCAAGTTCGGCTTTATTGGCTCCCACCTCGGGTTCAATGTCATCGGCTACGAGTCCTGCACCATCAGCGGCTACGATTTTAGGCAATAATCCTCAAAATTTGGGCAAATACTGGGTTGTAACGAATTTATTTCAAGGCCAGCCCGGACATCAACAACCCGCAACAACCGCTGCCTACAGTGAAAGCGGTGGCAACGGCGGTGGAGTGACTTACACTCAAACATCTATAGCAGGAGTGCCTTCATCGACGCTGGTACGTGCAAtatcaacaacagcagcatcatcGGCCGGAGTAACAAAATCATCGGAAGCGGTAACGAACAGCAGTGCTGGAACACTGCAAATACCGCAAGCGACTCAAATGTTGTCTCAGGCGGCCATAGGGCAACAATTGCCAAATGGTACGATTATAACAACCCAAGCCGCCCAACAACAGAGGCATGACCACCAACAGCAATTACACGTACATgCTTTAAATACTGCTGAAGAAAATcgtcagcaacaacagcagcagcagcaacaacaacagcagcagcagcaacaacagcaacaaattgcacaacaacatcagcagcaacaacaacagcagcaacaacaacagcagcagcaacaacatgttGCTGTTCACCAATCGAACGATTCAATAAAGGACGAAAAGCCCTTTAATTCAAATGGCAAAATTCCCACAACCAACCAACAGATAATAATGCAACATATATCTACAGCTGCTTCGGCGGCGACTCCTGCCACATCGGGAGCCACCACCATAACATTGGGTGCCCCGAAGGCTGAGATAAAAGATGATGGCAGTGTGGTGGTAGGTGGCAAAATACACCCGGGCATTGAAATGTATAAAGTCAATATTGAAGATATATCACAGCTATTTGCCTATCATGAGGTATTCGGGAAGATTCACGGTGATGTTATAAATCACCCATTAGCGGCAGCCCATGCCAATATACCGGTTTCATCAAATAGTAGTATAGCAACGGCTGTTGCTGCCACCGCCAGTAATGCGAACGATTCaaatcagcagcaacaacagcagacaAGTGGTGGTGTGGCAGTCGTGGCAAATAGCGGTGCCATACAACAGCCGGAATCGACTATAACTACAACTGCCACTGGCACGGGTGCAGTGGCAACCACAAGCGCAGCGACTGCTATTGCTAACACGCAGGCGTCCGCAACTACAACGTCTGGTGGGGCGGCTGCTGGCCTGCTTTTACCCAAAATGGAGGGCGGCATTGCGACCGTTGACCAAAGCGCCATAACCTTGGCTCCAGATGGAACTGTGGTCTCGACAGGGGAACATGTTTGCGATATCTGTGGCAAAATGTTTGCTTTTCGCTATCAGTTAATAGTCCATCGTCGCTACCACACGGAACGCAAACCTTTTAATTGTCAAGTTTGCGGTCAGGGTTTCTTTACCTCACAAGATCTAACGCGTCATGGTAAAATTCATATTGGTGGACCCATGTTTACCTGCGTGGTGTGTTTCAATGTTTTCGCCAATAACGCGTCACTGGAACGTCACATGAAACGACATTCGACCGATAAACCCTTTGCCTGCACGATATGTCAGAAGACATTCGCTCGCAAAGAACACTTGGAAAATCACTTCCGTTCTCATACCGGCGAGACTCCCTTCCGTTGTCAATACTGCGCGAAAACATTTACACGCAAAGAGCACATGGTTAATCATGTGCGCAAGCATACGGGAGAGACACCGCATCGTTGCGACATTTGTAAAAAATCGTTCACACGTAAAGAACATTATGTTAACCATTATATGTGGCACACTGGTCAAACTCCTCATCAATGCGAAGTTTGTGGCAAAAAGTATACACGTAAAGAACATTTGGCTAATCATATGCGCTCCCATACCAACGATACGCCCTTCCGTTGCGAAATATGCGGCAAAAGTTTCAGTCGCAAAGAACACTTTACCAatcacattttatggcatacaGGCGAAACACCCCATCGTTGTGACATCTGTTCGAAAACCTTTACGCGCAAAGAACACTTACTAAATCATGTGCGACAGCATACGGGCGAATCACCGCATCGTTGCACCTACTGCCCGAAAACGTTTACGCGcaaagaacatctaacaaatcATATACATCAACACACCGGCGAAACACCCCATCGTTGTGACTTCTGCTCGAAAACTTTTACGCGCAAAGAACACTTACTAAATCATGTGCGACAGCATACGGGTGAATCACCGCACCGTTGCACCTATTGCCTGAAAACGTTTACGCGCAAAGAACACTTGGTCAATCACATACGCCAGCACACCGGCGAGACGCCGTTCAAGTGTAATTATTGCACGAAAGCGTTCACACGCAAAGACCACATGGTCAATCATGTGCGACAACATACCGGTGAATCGCCGCATAAGTGCACCTTTTGCGCCAAAACATTTACGCGCAAGGAGCATCTAACAAATCATGTGCGTCAGCATACTGGCGAGTCGCCGCATCGTTGTAGTTATTGCAAAAAGACGTTTACGCGCAAGGAGCATCTCACGAATCATATACGCTTGCACACGGGTGATTCGCCGCACAAGTGTGAATACTGTCAGAAGACATTCACGCGTAAGGAACACTTGAATAATCACATGCGACAGCACTCGAGTGATAATCCGCACTGCTGTAATGTCTGCAATAAGCCGTTTACGCGCAAGGAACATTTAATCAATCACATGTCACGCTGTCATACCGGCGATCGTCCGTTCGCCTGTGAGACATGTGGCAAATCATTCCCTCTCAAGGGTAATTTGCTCTTCCATCAACGTAGTCATACTAAGGGCCAGGAAATGGAACGGCcattttcatgtgaaaaatgtccCAAAACATTTATATGCAAAGGTCATTTGGTTTCTCATATGCGCTCTCATTCCGGTGAGAAGCCGCACGCTTGTACTTTATGCAGTAAGGCTTTCGTGGAAAGAGGCAATCTGAAACGTCATATGAAAATGAATCATCCGAATGCTCCAATGCCACCTCCACCAGTGCCACATCCAATTATACCTGCCGGCGTACTGCCGCagataaaacaagaaattaaacCAGTTATAAGCGAACTAACTCCTTTACAAGCAGCTCCCATCGCACATACCATACAACAAATAACAGCTGGTGCTGGAGGAAATGCCGTGCAATTGCCCACAGGACTGGTGCCTTTGGTTACATCCACCATAACGTCTCATGCAACGCAGAAACAACCGCCTGCACCACAGAACCAGGCGCAAGCGCAACAGTTGCAGCAGCAGCAAGTTGTGACAACACATCAACAGCAGCAGGCCGCCGCTGCAGCAGCAGCTCACCAACAGCAGGTgttgcaacaacagcagcagcaacatcaacagCAATTAATGCAATTGTCCATACAACAAGCTGCGGCCGCAGCTGCACATCAGCAATTGCAGCAGCATCAGGAGCAACAAAGGcaacaacatcatcaacaacaacagcagcaacaacaacagcaacagcagcaacaaaatcaacaacaagCCCATCATCAACAAGCAGCTACAAATGTGACCGTTGTTGCATCATCTCATCAATCGGCTCAACAGCAGCAAGCATCCCAACAGAACGCACCGCAGCAGGCGAGTCAACAACAAgcccagcagcaacaacagcaaccaccaccaccacaagTGCCAATCGCTTTAATACAAACGGATCCGGAAGCATTGGCCCGTGCTGCCATGCAGCAATTGCAACATATGCCGCCTAATGTGGAACAACATCCAGTTGTTTACtaa
Protein Sequence
MNATDHATTPGESTTAAAAHLAAIIANTAQANGYDPQHQRHQQHNRHSPLQQHHHPAVAHSQLNESRGGTGVNVAHHHHNRQSLTITANQRYMPPTTTSEAATTSVNNNNSSSDHNNNGGAGVFGDGDIISQSPLSLIMSTTTSPSSKVANVAATTAASDSDTTSTPMATSYVVGHKQAMAQQQTVTATASPSTVVTVTGVANTSPVAAPSTHDDHLQHQQHQHQHQHQQQQHHHHHVNQTTSSSALLAPTSGSMSSATSPAPSAATILGNNPQNLGKYWVVTNLFQGQPGHQQPATTAAYSESGGNGGGVTYTQTSIAGVPSSTLVRAISTTAASSAGVTKSSEAVTNSSAGTLQIPQATQMLSQAAIGQQLPNGTIITTQAAQQQRHDHQQQLHVHALNTAEENRQQQQQQQQQQQQQQQQQQQIAQQHQQQQQQQQQQQQQQQHVAVHQSNDSIKDEKPFNSNGKIPTTNQQIIMQHISTAASAATPATSGATTITLGAPKAEIKDDGSVVVGGKIHPGIEMYKVNIEDISQLFAYHEVFGKIHGDVINHPLAAAHANIPVSSNSSIATAVAATASNANDSNQQQQQQTSGGVAVVANSGAIQQPESTITTTATGTGAVATTSAATAIANTQASATTTSGGAAAGLLLPKMEGGIATVDQSAITLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCVVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDICSKTFTRKEHLLNHVRQHTGESPHRCTYCPKTFTRKEHLTNHIHQHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCNYCTKAFTRKDHMVNHVRQHTGESPHKCTFCAKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPIIPAGVLPQIKQEIKPVISELTPLQAAPIAHTIQQITAGAGGNAVQLPTGLVPLVTSTITSHATQKQPPAPQNQAQAQQLQQQQVVTTHQQQQAAAAAAAHQQQVLQQQQQQHQQQLMQLSIQQAAAAAAHQQLQQHQEQQRQQHHQQQQQQQQQQQQQQNQQQAHHQQAATNVTVVASSHQSAQQQQASQQNAPQQASQQQAQQQQQQPPPPQVPIALIQTDPEALARAAMQQLQHMPPNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00679726;
90% Identity
-
80% Identity
-