Hcyr007793.1
Basic Information
- Insect
- Hydrotaea cyrtoneurina
- Gene Symbol
- -
- Assembly
- GCA_958296145.1
- Location
- OY282513.1:22809737-22819645[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.6e-07 3.8e-05 24.4 0.7 2 23 206 228 205 228 0.95 2 14 0.8 54 5.1 1.0 2 23 396 418 395 418 0.92 3 14 0.004 0.27 12.3 1.2 1 23 451 474 451 474 0.95 4 14 0.072 4.8 8.3 4.8 3 23 533 552 533 552 0.99 5 14 0.058 3.9 8.6 2.4 2 23 996 1018 995 1018 0.94 6 14 4.4 3e+02 2.7 0.6 6 23 1028 1045 1028 1045 0.92 7 14 0.00012 0.0081 17.1 5.1 1 23 1051 1074 1051 1074 0.96 8 14 1 70 4.7 3.5 2 23 1116 1138 1115 1138 0.94 9 14 0.0019 0.13 13.3 5.6 1 23 1171 1194 1171 1194 0.97 10 14 0.83 56 5.0 4.5 2 23 1247 1269 1246 1269 0.96 11 14 0.0066 0.45 11.6 1.3 6 23 1279 1296 1279 1296 0.99 12 14 1.7e-05 0.0012 19.7 0.9 1 23 1302 1325 1302 1325 0.96 13 14 0.0097 0.65 11.1 0.4 2 23 1384 1406 1383 1406 0.94 14 14 4.4e-07 3e-05 24.8 1.1 1 23 1439 1461 1439 1461 0.99
Sequence Information
- Coding Sequence
- ATGCCCCTCAAAAGAATTTGCCGTTTATGCGTAAATCGCTGCAGCAAGGGTTACAAAAGTCTTTACAATGAAAACGGTTCCAGAAATGCAGTGTATGACATCACAGCCAAATATTTCGATTCGGTGaTATTTAACTTGAAAGATGAAAACACTCCCGCAGTCGTATGTTTGCGGTGCTGGCACCATATCTGTGACTTTCACAACTTCCGACAGTCTGTACATTTGGCACAAACGAAATATCTGACACTCGATGTAACATCAACAGTCAAATGTAGTGATCCTGCGTCTTCAAACGTCGTTTACtatgatatttttgaaatggatgAAGCAAGGATAGTCCCTCCACTGCCAGAAGTAGAAGTGGCAAGTTCTGCAGTTGTATGTCCAATCCTGGATTGCAATGAGCTTGCCACCGGTGAACATTTTCTTAACGATATTGTTGTCAAGGAAGAAGTACAGTATATCACACCCCCAGAAATAAATGTCGTAGAATGTCCAGTTGATGACTGCTCCCCAGAGGATACCAACTATCACAGCGATGATGATCCGGATCGAAGAAGGCATAAATTTGCAAAGCGTAAATGTGTTCGTTTGCATACCAAGCCGAGAGTTCAAGTTTGTAAGGTGTGCGGAAAGGTTTTCTCGagaaattttagtttaaatcgGCATATGGCCAGTCAACACAACATCTCAACTGGCAATGTATCCACCCCTGTTGTCCCAGACATTTGTGAAAGCCCACAACAAATTCCGAAGGATTATATTACCAATGAAGATGATGAGAATGTCTTGCCTAATGATGCCCTCGATAATTATGAGTTTATTTCCCATCATAACATTTCGGACGctaatttacaaatttctcATGACAATGGACCTGCTGCGTTGAATGAAAATCCAGAAGACTCTTTTACAGATGGATACTTCAATGATGACTATGAACGaaaggaaattaaaattgaaatgaagTCGATGGATGAATCGGTATATTCAGACCACAACGAAATGTCACTACCGGAATCTCTGTTGAAATTGAACGAAACAAGAATAGACTCAACAGTTAACGTGTCCCAAGATTGCGACCCACAAAGTAATACGTCTCCAAAACGACCACATAAACGATTACGAAGAAAATGGACGACTAAGGAATTGGACGATTACATTGTCAAATGGAAACCAAATTTAGAATGCAGAGTTTGTAAAGGCCTTTTTTCCAGTTTTAGTCTGTTGCAAACACATTTTAATCTGAAGCATCCCCATGATGAGTTCTATATCTCCTGCTGTAAATCGAAATTCAAGACACGAAGTCCCCTTGTAGAACATATACACTTCCATGCTAACCCGAATGTTTTTCAATGCGAATTATGTGAAAAAACATTCACGAAAGGCCAAACATTGCAGTTGCATTTTCTTAAGATTCATAACATTGTCGCCAACAAAACTTATATTCCGCCCGACAATCGGAACAACTCAACTATCAACAAACCCAAAAGAGCTAACTCTCATAGGGACGAGGATGCCTCATTGAAAATGCGTAGGCCGACCATACGTGATGACCACAGTCGCCCTTACATCGATCAAAAACCTGCCGTTGGTTGCAAAGTATGTGGAAAACATTTatcaaaacagaaattaaagcGTCATATGCTGAAACATCAAAACAATCCATTAGATGACATTCCTGTCTCGTCCAATGACAACAATTCAATTGAATACCACATATCACAAAGTGATAGCCAATGGAACTCGAACTTCCGCATTAAACCAACATCACTTTTGAACGAGAAACGCGGGAATTATAGCACAGTTATGTGTTTAGAATGCTGGCGTCACATCATCGAATTCCACAACTTTCGACAGTCCGTACTTCTGGCCCAAATGAGACTGCGCAAAGACCCACAACAAACTGAGGTTATTGAGAAATCAACAGCGGATGCTGGTAACAGTGAACTTCGTTATGACGATATTGTAGTTAAGGTGGAAGATGATTTTGTCTCTCCACCAGTGATGAAAACGGTTAACACCATAAGCGAGTATCCCTTAGATGAGGCGTGTCATACTAGTGCTGGCAATGAAATATGTTATGGTTACATTGTCAAAGAAGAAGTAGAGTATGTCTCTCCCACAGAAATGGTAGCTATGGATTGTCCAACAGAAAGTCCGGACTGCAAAAGTCGTAccaccacaaacaacaacattttcgtgACAGACGAGCAAGAGTTGATCTCTTTGGTCagtacaacaaataaaatatcctTCAAGAAATGTATGAgcaaaactgaaagaaaaatggAGAGTTTCGAAATGAAACCAGTTATGTCGACAGATCGGGATATAGAAGTATCAAGCGATAATGGTGACACAAGCACTTCGCACGAAGATGAAAACGTTTCGTCGTATGACGAAACTTATATGCAATCGGAAGATGAAGAAGACCCCATAAGTAATTACACGGGAGAAATCTTAAAGGGTGACGACGAACTAATGGATATCTCAGAGTCTGAATTGCAATCAATTGATGTTTTTCATAGTTCAGATGAGGATGAATATACATTGAATTATTCGTCTAAGCCGAGTGACACAAAAACCATACCCAAATTGGGTAAAGATGTAAAGGCCACAAGACTTGTTGGACAACATAAATCGTCAGCTAAGCCAAAATCATCAGTTATTGCTGGCACTTCTCAAAAATACAAGCAAAAAAGAatcgtttcaaaaaaaacttttattaaagGGGAGAAAGGATTACTGGTCGAATGCCCAACAAACACGACTAGCAACTTCGAACAAGATGATCAAACCGAACAGATGCTCCAAAACCATCCAATTAAAAGAGAGACGAGTTTTCCGGAAGAATTCTCAATGGGTGAGACAATTATGTCTCAAGACGATGAGCCAGCAAAAAAGATGCCCAAAGGTCGACCACTAAAAAGCAAACGAGAAGAGGAACTGGACGATATTATAGCCCAATGGAAACCAAATTTACACTGCATGATTTGCAATAATTCATATACGACATATACGCTCTTACGGGAACATTACCGCGAGAAACATCCCCATGAGGAGTTTTACATCTTATGttgcaaaatcaaaataaagaaacgTGGCCATCTCGCCGAACATATACGCCTTCACATCGACCCCAAGGCCTTTAAGTGTGCATTTTGTGACAAAAGCTGTACAAGGAAACGTAATTTACGCCTTCATATGCTTAATAAGCATGGCTTCACTGATTGTGGAGATATTTCTTATCAGGACAATGCCTCGACGGCGAAACAACAAAACTTCACAAGGAAAAAAGTGAAGGACAGTGATGATTTCATAGCTCAATGGTTACCCAATTTGGAATGTGTGGTGTGCAAAATATCGTGCTCTAGTTTTACTTTACTGCAGGAACATTTCCGACATCAGCATCCCGACAATGAGTTTTATATTCTATGTTGTGAATTTAAGTTGTTTCAACGAATACACGTTGCAGAGCATTTACGCCTACACACCCATCCGAGAGCGTTTAAGTGTGAACTGTGTGGCAAATGTTTTACGATGAAACGCACTTTAGACTATCACATACATAGGGAGCATACTACCATCCCCACTGTCAAAGGTAATATTTCTGAAGACGATCAGGGAAATGTTATGAGCAcaacaaattgtaatcagcaaggaaaaataacaaaagaccAGAAAGATACCGTACAGAAAAGTGATGCGTTGATAGCTCAATGGCTACCGAATTTGGAATGTGGTCTATGCTCGGAATTATGTTGCAGTTTTACATCTTTGCAGAAACATTTGCGACGGCAGCATCCCAAAGGAAACGGTTACGTTTTATGTTgccaaagaaaattttttcaaagGGACAAATTACAGAGGCACATTCGTGTTCACTTATATCCCAAAGGCTTTAAATGTGAATTGTGCGGTAAGCGTTATTCGAGGGAATCTGGCTTACAGAGCCATGTTTCTAAGCAACATTATATCTCAATAGGTGATGATGGTGGTGTAAATAATTATCAGCACAATGAAACGTTCTCGTCGAACGAGGCCCTTGATCATTATCAGACAAAATCTGAATTCATGGACAAGTCAACTAAACGAAAGACAATACGAGAACTTGATGATATTATTGCTCAGTGGAGGCCAACCTTAGAGTGTGCGATATGCAATGAGACCTACCCAACGTTTACACTGTTGCAAAATCATTTCCGACAGCAGCATCCAAATGTAGAGTGTTACATTTCATGCTGTCAGTGCAAATTTCCGGGACGATACGACATTGAGGAACACATACGCTTCCATAACGATCCCGATGCGTTTAAGTGTGTAATTTGCGGTCGACGTTTTTCGAGGAGACGTGCTTTAAATGGTCACATGCGTACGCATCGTAGTCAGCAACAAGAATCGGCCAAATAA
- Protein Sequence
- MPLKRICRLCVNRCSKGYKSLYNENGSRNAVYDITAKYFDSVIFNLKDENTPAVVCLRCWHHICDFHNFRQSVHLAQTKYLTLDVTSTVKCSDPASSNVVYYDIFEMDEARIVPPLPEVEVASSAVVCPILDCNELATGEHFLNDIVVKEEVQYITPPEINVVECPVDDCSPEDTNYHSDDDPDRRRHKFAKRKCVRLHTKPRVQVCKVCGKVFSRNFSLNRHMASQHNISTGNVSTPVVPDICESPQQIPKDYITNEDDENVLPNDALDNYEFISHHNISDANLQISHDNGPAALNENPEDSFTDGYFNDDYERKEIKIEMKSMDESVYSDHNEMSLPESLLKLNETRIDSTVNVSQDCDPQSNTSPKRPHKRLRRKWTTKELDDYIVKWKPNLECRVCKGLFSSFSLLQTHFNLKHPHDEFYISCCKSKFKTRSPLVEHIHFHANPNVFQCELCEKTFTKGQTLQLHFLKIHNIVANKTYIPPDNRNNSTINKPKRANSHRDEDASLKMRRPTIRDDHSRPYIDQKPAVGCKVCGKHLSKQKLKRHMLKHQNNPLDDIPVSSNDNNSIEYHISQSDSQWNSNFRIKPTSLLNEKRGNYSTVMCLECWRHIIEFHNFRQSVLLAQMRLRKDPQQTEVIEKSTADAGNSELRYDDIVVKVEDDFVSPPVMKTVNTISEYPLDEACHTSAGNEICYGYIVKEEVEYVSPTEMVAMDCPTESPDCKSRTTTNNNIFVTDEQELISLVSTTNKISFKKCMSKTERKMESFEMKPVMSTDRDIEVSSDNGDTSTSHEDENVSSYDETYMQSEDEEDPISNYTGEILKGDDELMDISESELQSIDVFHSSDEDEYTLNYSSKPSDTKTIPKLGKDVKATRLVGQHKSSAKPKSSVIAGTSQKYKQKRIVSKKTFIKGEKGLLVECPTNTTSNFEQDDQTEQMLQNHPIKRETSFPEEFSMGETIMSQDDEPAKKMPKGRPLKSKREEELDDIIAQWKPNLHCMICNNSYTTYTLLREHYREKHPHEEFYILCCKIKIKKRGHLAEHIRLHIDPKAFKCAFCDKSCTRKRNLRLHMLNKHGFTDCGDISYQDNASTAKQQNFTRKKVKDSDDFIAQWLPNLECVVCKISCSSFTLLQEHFRHQHPDNEFYILCCEFKLFQRIHVAEHLRLHTHPRAFKCELCGKCFTMKRTLDYHIHREHTTIPTVKGNISEDDQGNVMSTTNCNQQGKITKDQKDTVQKSDALIAQWLPNLECGLCSELCCSFTSLQKHLRRQHPKGNGYVLCCQRKFFQRDKLQRHIRVHLYPKGFKCELCGKRYSRESGLQSHVSKQHYISIGDDGGVNNYQHNETFSSNEALDHYQTKSEFMDKSTKRKTIRELDDIIAQWRPTLECAICNETYPTFTLLQNHFRQQHPNVECYISCCQCKFPGRYDIEEHIRFHNDPDAFKCVICGRRFSRRRALNGHMRTHRSQQQESAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -