Hcyr009985.1
Basic Information
- Insect
- Hydrotaea cyrtoneurina
- Gene Symbol
- -
- Assembly
- GCA_958296145.1
- Location
- OY282513.1:86712071-86714466[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.5 1.7e+02 3.5 3.9 1 17 426 442 426 448 0.72 2 10 2.4 1.6e+02 3.6 7.6 1 23 454 476 454 476 0.98 3 10 8.1e-06 0.00054 20.8 0.4 1 23 482 504 482 504 0.98 4 10 0.0008 0.054 14.5 2.1 1 23 509 531 509 531 0.98 5 10 1.1e-06 7.3e-05 23.5 2.5 1 23 537 559 537 559 0.98 6 10 0.0014 0.095 13.7 1.0 3 23 566 587 564 587 0.94 7 10 0.042 2.8 9.1 0.3 1 23 598 620 598 620 0.97 8 10 8.3e-05 0.0056 17.6 1.3 1 23 630 652 630 652 0.98 9 10 2.4e-05 0.0016 19.3 0.3 2 23 659 680 658 680 0.96 10 10 0.0016 0.11 13.5 1.7 1 23 685 708 685 708 0.96
Sequence Information
- Coding Sequence
- ATGGATTTAGTCAAATCCTTACAAGACATGGAATTATTGAAGACATTTACAAAATGTGGTCATATTTACAAATCGAAATCGCCTGCCGTCAATGAAAAACATTACTTGTTATTATCGTGTCTGGAATGCAGCGATGTTTTCGGGGAATTGGAAACTTTTTTGGAACATACGCAAAATCATTTGGCAGCCGATGATTTATACTCAGAAGCAATCGAGGATGATCCGGAAGTAAATGTACCTGTCAAAGAGGAAACTAAAAAGTCAAAAGAATACGTAAATGACGGTCGCACTCAGAAAGAGAAGGATCCATTAGAGGAAGATGGCTGTGATTTTCTGGAACAACCGTTAGATGTAATTAAAATAGAGAATACGGAAATCGTAGAAAAGGATTTGCCACAGAATGGTGAAAGCACTGACAATGATATTGACACTGACGATGATGCCTACGACGATGATTTTGAGCCCCAGAAACAATCAGACGAAGATGTCgattatgatgatgatcatgACTATGTTGATGATTTTGGCGACGACAATGAGGATTTTTTATTAGATAATACTCATGATAATGCCACAAAGTTACCCGAAAACGAGAAATCCAGTCTGaaacgttttacaaaaaattatgcTTTTGTTAGAACCATTATCACAGCCTATAAACAGCATGACTTATTATGGGACTCGACAAGTAAATCCAGAAATCCCCAAGAGAAATTGGAAGCTTATTCAGCTATATTGAATGTAGTCAATGAGAAATACCACATTAATGCAACGATAAAACAACTGGAAATGGTTATAAAACGCTTACGGCTACGGTTTATGCAGCAATGTCGAAAGAACAGCTTGTGTGCACTTCGTTCGGATGATAACACCAAATCTCTATGGTATTATGATCTACTCAAGTTCATAGAACCCCATATCAGTGGAATCAAACAGAAAACCAGCCATTGTCAGGAATTAACGGACGCGCAACTGCAGACATTAATAAAACTATTCAAAGGCAACGAGTGCTTCTGGAATGAAGACAATATCTATCATACGTCGGTGGTGTACAAACAGGAATCCTTGCAAGCCATGACAAACAGATTTAACGCTATTTGTGATCCGGAACGTTTTACtgtaaacgaaatgaaaaacatcGTAGAGGAACTGAAAGATATGGCAATGGAGGAAAATAAGCATATGATGAAAGAATGTCAGACGGAGTCGAATGAATATAAACCACTGAATAGATTGCATAGCGAATTGAAATTCCTCTTGCCGCACGTGGGTCCTTTCAATTGTAAACACTGCTCGAAGTCATTTTTAGATGTGTACAGTTACAAATTTCACGTGTCAAAACACGATGGTACCAAACCATTCAAATGCATGCTCTGCCAAAAAGAATTGACGCACAAAAAGGAATTTATGTGCCACTTGCGGCGTCACACCAAAGAGTGTCCTTTTCAATGCGAATTGTGTGACAAAGCTTTCCCCAGCAAAAAGGAGTGGCAGCGGCATGTCATCAAACACGGTCCCAAGCCATATGTATGTGAGCTGTGTGCCGATAGCTTCTATACGCAACATCAACTGACTAACCATATGAAGAACCATGCAAATATACGCGATCACGTGTGTCCGCAATGCGGAAAAGGCTTCACTCATCGGGGTTTATTGAGGCAACATTTGCAAACTCATAATAAAACGGAATGTCTGTGTCCAATTTGTAACAATACTTACGCCAATCCCAGAAGCTTACGTAAGCATTATGTGCGGGTTCATGAGGTGCCCCAAGAAACGCCCTCACACATGTACAACTGTAAGATATGCGTGATAACATTTCCAACAATACAAGAGGCCAAGCAACATCGTAAGGAACACAAACAAAGTCTGCCAAAGAAACGTAAGCATGTTTGCGACATATGTGGTCATGATTTTGCATATCCCAGAAATTTGGCTGACCACAAGAAAACCCACACGAATATACGCGATCAAGTGTGTGATGTGTGCGGCAAGGCCTTTACAAACACGAATCTACTGAATCAGCATAAAAATGTCCATAATGGTCAGAAGTTTATATGCAAGGCATGTGGTAAAGATTATGCTCATTATCGGGGCCTGTGTCGACATATTGCGACGGTTCATGGGACCAACGTAAAAGAACTGTGCAGTGTAATTGAGAATCAGAGCTAA
- Protein Sequence
- MDLVKSLQDMELLKTFTKCGHIYKSKSPAVNEKHYLLLSCLECSDVFGELETFLEHTQNHLAADDLYSEAIEDDPEVNVPVKEETKKSKEYVNDGRTQKEKDPLEEDGCDFLEQPLDVIKIENTEIVEKDLPQNGESTDNDIDTDDDAYDDDFEPQKQSDEDVDYDDDHDYVDDFGDDNEDFLLDNTHDNATKLPENEKSSLKRFTKNYAFVRTIITAYKQHDLLWDSTSKSRNPQEKLEAYSAILNVVNEKYHINATIKQLEMVIKRLRLRFMQQCRKNSLCALRSDDNTKSLWYYDLLKFIEPHISGIKQKTSHCQELTDAQLQTLIKLFKGNECFWNEDNIYHTSVVYKQESLQAMTNRFNAICDPERFTVNEMKNIVEELKDMAMEENKHMMKECQTESNEYKPLNRLHSELKFLLPHVGPFNCKHCSKSFLDVYSYKFHVSKHDGTKPFKCMLCQKELTHKKEFMCHLRRHTKECPFQCELCDKAFPSKKEWQRHVIKHGPKPYVCELCADSFYTQHQLTNHMKNHANIRDHVCPQCGKGFTHRGLLRQHLQTHNKTECLCPICNNTYANPRSLRKHYVRVHEVPQETPSHMYNCKICVITFPTIQEAKQHRKEHKQSLPKKRKHVCDICGHDFAYPRNLADHKKTHTNIRDQVCDVCGKAFTNTNLLNQHKNVHNGQKFICKACGKDYAHYRGLCRHIATVHGTNVKELCSVIENQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -