Hcyr020763.1
Basic Information
- Insect
- Hydrotaea cyrtoneurina
- Gene Symbol
- -
- Assembly
- GCA_958296145.1
- Location
- OY282516.1:57267369-57271545[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.2 79 4.5 0.1 3 20 387 404 385 408 0.89 2 13 0.31 21 6.3 0.1 6 23 417 434 417 434 0.98 3 13 0.004 0.27 12.3 3.5 1 23 440 463 440 463 0.95 4 13 0.00031 0.021 15.8 1.3 1 23 470 492 470 492 0.98 5 13 0.046 3.1 9.0 0.1 6 23 722 739 722 739 0.99 6 13 0.0014 0.096 13.7 3.0 1 23 745 768 745 768 0.95 7 13 0.0002 0.013 16.4 1.7 1 23 775 797 775 797 0.98 8 13 0.00021 0.014 16.3 2.0 1 23 805 828 805 828 0.97 9 13 0.2 14 6.9 2.9 3 23 836 856 835 856 0.97 10 13 0.28 19 6.5 1.6 3 23 866 887 864 887 0.94 11 13 0.78 52 5.1 2.6 1 23 895 918 895 918 0.76 12 13 0.0001 0.0068 17.3 3.2 1 20 924 943 924 946 0.96 13 13 1.8e-05 0.0012 19.7 2.9 1 23 952 975 952 975 0.97
Sequence Information
- Coding Sequence
- ATGGATATGTGTTTGTTGTGCTTGGAGCTACAGCACGAATCGGTGGATTGTATTAATGTTACCTCCAGACAGTGGGAGGAGGATAATATAGAGCAATTGATAGAACAACATTTTTGGCCTTTGGAATCAATAACATCCGATGCTTGGATTTGTGGAGCATGTTGGCACGTTTTAAACGAATTCCACCAATTCTACATTCGCGTAGAGGATGCCCATGTGGGCATGGCTATTACAATGAACACCGTCCAATCACCACAACAGCAGCCGGTGGTTGCAAGTGATACAGCTGATTTTGAAGATATGATAGATAAGGAATTATCGAAACAGATCCAAGGTATTAATAtcgttataaatttaaataatctaCCCAGCGAACCAGAATTAAGATTGGATCAATTGGCACAAAACAGCGTTCATGAAGATTGTAGTAATCTAGAAGAAGCACTATCTATGGAGCAGGCAGTAACAAgttattttcatgaaaatgtcgTACAAGGGCATCTGAATGAATTCGAAACAGAGCCACACATTGATCTTATACAAGCAGATAAATTAGATTTGGTGGATGAGATGCCAACTTATTTAATACAAGAAGGGACATTAGCACTAGTAGGAGGCAATGACGATACAGAACTACCAACCTATCAAATATTGGCAAGTCAAACAGTAGGAGTGGAAGTGGGTAATGATAATATAGATCTATCAAGTAGACAAGATATCGATGAAGATAATCTTATCCAATTGGATCAAATACAAATAAGTGGAGCGCTTTCAGATCAAATTGAAGTTGTAAATGAACCACCTATCGACCACGTGAAAAGAAGTCTAAGTGATCAAGAAGAAAAGCAAAGTGGAAATCGTAAAGACAATTTGGATCAAGTACAAAGGGGCGGTGATCATAACGGTCTCGCAGAATCCCATgttgaaatacaaacaaaccaaGTTGTCGAAGATCATAATGAGGTTGTAATAGAGGAATCGGGACGGGACAAAACTTTACAATCCACTGAGCCCAATTCCGAAGACCTCGAAGAACCTATAGATTATCCAAGCGCCTCTGGAACACCCGATTCATATTCCGATAATGAATCATTGGCTTTAGGAAATaacaaatcgaaaaatcatgatGAATTTCTatccaaacatttcaaaatcgaTTGTCCCATATGTCAGGAGGCAATGCCGACATTTAAGAATTTGCTTAAACATTTTGTCGATGTCCATAAGAGGCGTGGCTATGCTAAGTGTTGCGACCGTAAGTTCATGGGCCGTGGTAGCCTCGTGGAACACATCCGTTGGCACTGCGAACCGCATAACTATAAATGCAAGTATTGTGACAAAGTAATGACCACCAAACGCTCTCTGAGTTTACATGAAAAGCATATACATGAAAAGAATTCTATTTGGCACAAGTGTGATATATGCCAGAAAATGTTTGCTTCGGCCAACGTCTTAAATAGTCACAAGCTGACACATCTATCGGATGATAAGGACACAAAAACTAGTCTAAGTGAACCAGAAGAAAAGCAATTGGACAATTTGGATCAAGTACAAAGTGGCGGTGTTCATGAAAGTCCCGCAGAATCCCCTATTCAAATACAAAGAATGCAATTCGTCGAAGAAGATAATGAGGTTATTAAAGACGTATGTAATGACGAGGAACCCATGACCGATGAGGAGGTTGATAATCGAATATGTCGACGGGATCCCTTAAAGAAACCTTTAATTACAAAGAATAATACAATTCCTAAAGCATTGCTCGATGAGGGTAACGTTAGCATGGTTTTACTAGAGTGTATAGAAGATTTGTGTGAGAAAAAATCGGACGACATTTTGGAAGAAACTTGTAGTCAAGCACCTAAAGAATCTTTAGAAAatgaaaccaaaataaaactgtgTAAGATAATCACCGATAAAACGCTGCAACCGATTGAGCACAATTTGGAAGATACTACAGATTATCCGAGCGACTGTAAAACGCCCGATTCATATTCCGATAACGAATCATCGGCTTTGGGtaataacaaatcaaaaaagattGATGAATATCTatccaaacatttcaaaatctaTTGTCCCATATGTCAGGAGGCAATGCTTACATTTAAGAATTTGCTTCAACATTTCGTCGATGTCCATAAGACGCTGGGTTATGCGAACTGTTGTGACCGGAAGTTTATGAGTCGTGGTAGCCTCGTGGAACACATACGTTGGCACTGCGAACCGCATAACTATAAATGCAAGTATTGCGGCAAAGTAATGTCCACGAAACGCTCTCTGAGTTTACATGAAAAGCATATACATGAAAAGAATTATATTAGGCACAAGTGTGATATATGCCAGAAAATGTTTGCTTCGGCCAACGTCTTGAAGAATCACAAGCTGACACATCTATCGGATGATGAGAAAAAATTTCACTGCGATCAATGTGCCAAAAAATTTGGTTCCAATTCTTTACTATTTAATCATATCCGTTCGGTCCATATGGCCAAGTACATTAAAATTTGCGATATTTGTGGTAAGAAATTGCGATGCCGGGAGGATTTCGAACATCACGTATTGACCCATAAATGTGAACAATTGCCTCAGGTCGCCTGCGATATATGTGGTCTTAAGTTGTGCAGCAGCAAAGCTGTGAAACACCACAAATCAATCCTACATCCGGTGGGCGGCAAAAAGGAATATAAATGTCATATATGCTCAAAAGTTTCCGATAATCTCATGGCTCATCGCGGTCACATTCGATATAAACATGAAATGACCCGCAattacaaatgtaaaatatgcGGCAAGGGCTTTAAGAAGGAATTCTCATTGAAGgaACACATGGCGTGTCATACCAAAAATCCGTCGTTCTCATGTCCCTACTGTCCGAAGACATTTAACTCGAATGCCAACATGCACTCTCATCGCAAGAGAGACCATCCCCAGGAATGGTTAGATGACCGCCGTCAAAAGTATTCGGGCCAATTGCCACCTAAGTTAATACCACCGTCCACCTTGCACAAACACATTGGCTATCCGTTGCCTGAAGATGCTGTGCAATAA
- Protein Sequence
- MDMCLLCLELQHESVDCINVTSRQWEEDNIEQLIEQHFWPLESITSDAWICGACWHVLNEFHQFYIRVEDAHVGMAITMNTVQSPQQQPVVASDTADFEDMIDKELSKQIQGINIVINLNNLPSEPELRLDQLAQNSVHEDCSNLEEALSMEQAVTSYFHENVVQGHLNEFETEPHIDLIQADKLDLVDEMPTYLIQEGTLALVGGNDDTELPTYQILASQTVGVEVGNDNIDLSSRQDIDEDNLIQLDQIQISGALSDQIEVVNEPPIDHVKRSLSDQEEKQSGNRKDNLDQVQRGGDHNGLAESHVEIQTNQVVEDHNEVVIEESGRDKTLQSTEPNSEDLEEPIDYPSASGTPDSYSDNESLALGNNKSKNHDEFLSKHFKIDCPICQEAMPTFKNLLKHFVDVHKRRGYAKCCDRKFMGRGSLVEHIRWHCEPHNYKCKYCDKVMTTKRSLSLHEKHIHEKNSIWHKCDICQKMFASANVLNSHKLTHLSDDKDTKTSLSEPEEKQLDNLDQVQSGGVHESPAESPIQIQRMQFVEEDNEVIKDVCNDEEPMTDEEVDNRICRRDPLKKPLITKNNTIPKALLDEGNVSMVLLECIEDLCEKKSDDILEETCSQAPKESLENETKIKLCKIITDKTLQPIEHNLEDTTDYPSDCKTPDSYSDNESSALGNNKSKKIDEYLSKHFKIYCPICQEAMLTFKNLLQHFVDVHKTLGYANCCDRKFMSRGSLVEHIRWHCEPHNYKCKYCGKVMSTKRSLSLHEKHIHEKNYIRHKCDICQKMFASANVLKNHKLTHLSDDEKKFHCDQCAKKFGSNSLLFNHIRSVHMAKYIKICDICGKKLRCREDFEHHVLTHKCEQLPQVACDICGLKLCSSKAVKHHKSILHPVGGKKEYKCHICSKVSDNLMAHRGHIRYKHEMTRNYKCKICGKGFKKEFSLKEHMACHTKNPSFSCPYCPKTFNSNANMHSHRKRDHPQEWLDDRRQKYSGQLPPKLIPPSTLHKHIGYPLPEDAVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -