Hcyr007296.1
Basic Information
- Insect
- Hydrotaea cyrtoneurina
- Gene Symbol
- -
- Assembly
- GCA_958296145.1
- Location
- OY282513.1:9010560-9015623[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.1 1.4e+02 3.8 0.0 2 23 231 252 230 252 0.95 2 15 0.93 62 4.8 2.2 3 23 394 413 392 413 0.94 3 15 0.0033 0.22 12.6 2.3 1 23 427 449 427 449 0.96 4 15 0.00025 0.017 16.1 0.3 1 23 458 481 458 481 0.96 5 15 0.00011 0.0074 17.2 1.0 1 23 486 508 486 508 0.97 6 15 2.1e-06 0.00014 22.6 0.8 2 23 514 535 513 535 0.97 7 15 0.0023 0.15 13.1 2.2 1 23 541 563 541 563 0.98 8 15 0.012 0.78 10.8 3.8 1 23 568 590 568 590 0.95 9 15 0.5 34 5.7 2.6 1 23 595 619 595 620 0.96 10 15 0.00045 0.03 15.3 0.7 1 21 691 711 691 712 0.93 11 15 0.0037 0.25 12.4 0.5 1 23 720 742 720 742 0.98 12 15 1.8e-07 1.2e-05 26.0 0.3 1 23 747 769 747 769 0.99 13 15 0.02 1.4 10.1 2.4 3 23 777 797 775 797 0.97 14 15 0.016 1.1 10.4 4.4 1 23 802 824 802 824 0.96 15 15 1.1 71 4.7 0.5 1 23 829 853 829 853 0.95
Sequence Information
- Coding Sequence
- ATGGAACGCTGTCGCTGTCGCGTTTGTTTGACCAATTCTGGGAGTTTTTATGACATATTCGATGAATGCAAAGCGTCTCTAACCTATGCTGATAATATTCGACACATTGCTGAAGTGGAAGTGGAACGGGACGATGGCTTACCACAACAAATTTGCATGAATTGTTGTGCAGAACTTGGTAGCATTTATGAATTTGGGTTACTTATTCGCCGGGGCGATGAAGAGCTAAGAAAAGAACTGGAGGAACGAAAAACAAATCCGGAAGTGGGTGAAGAAAATGTACAGATATTGGAAGATGATTGTTTTCTTCAGGATGAAGAGGTAGATATGCAGGTGTTAGAGGAAGAAGTACTGGATGGTGATTTGCACGAACAGCAGGAAATTACAGTAGTGGAATGTGTTAAGGATGACCATTGTGTGGACGAACTGCAAATGGTTGAAGAAATTATAGAAGTGGATGAGGAAGTGAATAATAATCCAAATGTAGAAACTTCAATATCAACACAAAATGATCTTCTGGTAGAATTGGCACAAGTTGCTGCAACCCAAGAAAACGTACTTATTAACCACCATGGCAGTGACAACAAACCAGAGGCGGAATATTATACCGAAGATGAGTGCGATGATGATTACTTAGTCGTTTACAATTCTGCCGAGGAAGTACTCTACAATTTCAAACCACCCAAATGGAAGTGTGGAGAATGTAAAACAATCTTGCGCGGAGATGTCTCATATGAGGGACACATGAATATACATAAAAAACTGCGGCCACACAAATGCTCCCAATGTCGGTGCCAATATAGGTGTCGCACTGCGTTAAAGAAACACAAAGATGTTCGTCACCCTATTACCCCTGCTAATACGACATTGCACCAAAGCAAAACAGATGAAACTTCTATAGTTAACTCTAAATGTATAGAATGCAATGAAGAATGCCAAAATGATGTTGATCTTCTGCTACACGAATTATTGGTCCATGACAATCGTTCCAATATAAGAACTTGTCCTTTCTGCCCCGATCTTATTGTGGATAATTTAGTAGATCACCTGAAATTCGCCCATGTGGTTAAAACGAAGCCAGCTACTACAAACGAACTGCTTACGATTTCAGAAGAAATCGATCAAGACTTATATGAGTCGGAAGACAATTGTACGGAAGGCTCAGACACTGTTGTTCACTGTGAGATATGTAAGCGGAAATTATTGAAGAAAAACCTGCTGAAACATATGGTTCTACATAAACGGAAAGATAAGGAAACGGACCATGTTGAAGCGAAATACTTGTGTGCCTATTGTCCACGTGAATTTAAAAACGCAAAATATATGCACCAACATGAAAAGACTCACGAAGGGGAATCATCCAATACTGTATATGTGTGTGGTGATTGCGACCGTCAATATCCGACCCAGTTCCTGCTCGAGACTCATCGCAAACAGGCACACAAAGAACGTGATCATGTTTGCTCCATATGTGGCAATGCgtttaaactaaaaaatcaACTTGTGAATCATATGAAAttgcacttggagaagaacatacCATGTCCACACTGTGATAAGAAATATGCGCGGCAATTCGATCTGAACGTTCATCTGCGATCTCATACAGGAGAAATGCCGTATGCCTGCCATCTATGTGACAAACGGTTTGCCATAAAAGTCCGTCTCACTTATCATCTGCAAAAGCACTATGGCGTCAAGCATCAATGCAAAGAATGCCAAGCagaattcaattcaaaacaaaaactgaaagcGCATTCATTCAAACACACTGGAATGCCGTACCGCTGCGAATTGTGCGATGATCATGGTTTTGCCACACGAGTAGTATTTAAACGGCATTTAAATCGGGTACATCATGCCACAATGTCCGATGAGGCCTTAACGGATATGTTCCAACGTAATACGGGGAAAACGATCAAAATTAAACAAGTCACTGAGCCATCTGATGATGTTGAGGAGGAGATGATTTTGTCTCAGTTACATTCCTGTTGTGTTGACTTAAAAGATCACGTCACTTCCGAACATGTTCCTATTCAAACAACAGATAACATGTACTTCGAAATACTGCATGAATGTGCACAATGTAAGAAAGTGTTCGATGATTTGGATTCCTTAAAGAAACATGAAAAGTCAAAAGTCTGTACGGAACAAAAATACATGTGCAAGGAATGTGGCAATATATTTGGTGGCCATGCCCAGCTATCTGCCCATAAACGTTTACATAAAGAACGACCTTATAAATGTGATCAGTGCGATAAAGCCTATCCACGTAAAGTGGAACTTGAAATTCATATGCGCACCCATACAGGAGAATTGCCGTACGGTTGCCATTTGTGTAATAAACGTTTTGCCATTAAAGTACGTCTGACATATCATTTGCAAAAGCATGAAGGTGTTAAgcacagctgtcacttttgtgaTGCCGTCTATGATAATCGCAATAAGCTGAAGGCGCATCTGTTCAAACATACTGGTATGCCGTATAAATGTGAACTGTGTCCTGGTTTGGAATTTGAAAGGAGATTGAGgTTTGCCAATCATATGCAACGATATCATCAGCAAATTTTAACGGAAGAGGAACTGGGTGAGATATTTGCTAAAAATACCGGAAAAACTGTACGCTTTAAACCTCCTGGAAAACGAAACGTTTAA
- Protein Sequence
- MERCRCRVCLTNSGSFYDIFDECKASLTYADNIRHIAEVEVERDDGLPQQICMNCCAELGSIYEFGLLIRRGDEELRKELEERKTNPEVGEENVQILEDDCFLQDEEVDMQVLEEEVLDGDLHEQQEITVVECVKDDHCVDELQMVEEIIEVDEEVNNNPNVETSISTQNDLLVELAQVAATQENVLINHHGSDNKPEAEYYTEDECDDDYLVVYNSAEEVLYNFKPPKWKCGECKTILRGDVSYEGHMNIHKKLRPHKCSQCRCQYRCRTALKKHKDVRHPITPANTTLHQSKTDETSIVNSKCIECNEECQNDVDLLLHELLVHDNRSNIRTCPFCPDLIVDNLVDHLKFAHVVKTKPATTNELLTISEEIDQDLYESEDNCTEGSDTVVHCEICKRKLLKKNLLKHMVLHKRKDKETDHVEAKYLCAYCPREFKNAKYMHQHEKTHEGESSNTVYVCGDCDRQYPTQFLLETHRKQAHKERDHVCSICGNAFKLKNQLVNHMKLHLEKNIPCPHCDKKYARQFDLNVHLRSHTGEMPYACHLCDKRFAIKVRLTYHLQKHYGVKHQCKECQAEFNSKQKLKAHSFKHTGMPYRCELCDDHGFATRVVFKRHLNRVHHATMSDEALTDMFQRNTGKTIKIKQVTEPSDDVEEEMILSQLHSCCVDLKDHVTSEHVPIQTTDNMYFEILHECAQCKKVFDDLDSLKKHEKSKVCTEQKYMCKECGNIFGGHAQLSAHKRLHKERPYKCDQCDKAYPRKVELEIHMRTHTGELPYGCHLCNKRFAIKVRLTYHLQKHEGVKHSCHFCDAVYDNRNKLKAHLFKHTGMPYKCELCPGLEFERRLRFANHMQRYHQQILTEEELGEIFAKNTGKTVRFKPPGKRNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -