Hcyr021182.1
Basic Information
- Insect
- Hydrotaea cyrtoneurina
- Gene Symbol
- -
- Assembly
- GCA_958296145.1
- Location
- OY282516.1:65363968-65368383[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.22 15 6.8 0.1 5 23 394 413 393 413 0.92 2 17 0.0093 0.62 11.1 1.3 2 19 425 442 425 444 0.94 3 17 0.082 5.5 8.2 0.1 3 23 486 507 485 507 0.92 4 17 0.32 22 6.3 1.6 5 20 517 532 514 535 0.90 5 17 7.6e-05 0.0051 17.7 1.7 1 23 541 564 541 564 0.96 6 17 3.4e-05 0.0023 18.8 0.8 2 23 572 593 571 593 0.96 7 17 0.43 29 5.9 0.0 1 21 602 622 602 623 0.90 8 17 9.9 6.7e+02 1.6 4.2 1 22 643 664 643 667 0.89 9 17 7.4e-05 0.005 17.7 5.4 1 23 672 694 672 694 0.97 10 17 0.8 54 5.1 0.2 1 23 710 734 710 734 0.97 11 17 0.0088 0.59 11.2 1.1 1 23 744 767 744 767 0.96 12 17 0.002 0.13 13.2 7.8 2 23 773 795 773 795 0.93 13 17 3.4e-05 0.0023 18.8 0.6 2 23 799 821 798 821 0.93 14 17 0.0013 0.085 13.9 2.7 1 23 827 850 827 850 0.96 15 17 0.16 11 7.3 1.3 1 21 855 875 855 878 0.90 16 17 7.2e-05 0.0048 17.8 2.0 1 23 884 906 884 906 0.99 17 17 0.0098 0.66 11.1 1.0 3 23 918 940 917 940 0.94
Sequence Information
- Coding Sequence
- ATGTCGGTGGTTATTAATTCTACAAATCGGGGcagtatttgtatatattgCAAGACAATCAATTCAGACACTGAATATCATGATATTTTTGATGAAGTTGGTTTGGAACTGCAATTATCATCGTTGGTTCGGCAATTCTTCGGAATCAACGTTGAATGTAACAGAAATAAACAGTTACTGTGTGAGGACTGTGTCAATCGTTTGATAGAGTTATTTGATTTGGAGGAACATTGCAATGAGGCGAAAATTGCTGACAATAATGAAGTTCCAAGTGGAAAACATGCTTCCCTTCCAAGTCAAGGTGAAAGCAGTAATAAAAATCCCCTTCTCGTCAACAATATTGAATTATCATCTAATTATGAATATGTGATCGAAAATGATGAAGAAATCCTTAAAGTGGTCGAAAGTACTGAACAAATCCTTAATGTGGATGATGAGTCGGTTGCAACATTGAGTAATCATGTGGAGGAGGATGAAAAGGAGGGATTGGAACAAGATATTGCCATTGACTCTGTTCTAAATTATGGCGAATCCGAATCTGAGTTTGCCGAAGATAGTCATATTGATGCGGATAATGGCAGTATAATTCCCGATGACCACATATATTATGAGACTGAGTATACGGGAAATGTTTCTGCCGGCGGAATAACAAACGTATCCCTTCATCAAATTGTGGAAGAACAACAAATTCCAGATGAAGAGCTATTGCTGTTGGAGAGTGCCAgtccaaaaatcgaaaatgatgtCTACGAAGAGGTCATAACTATGGAAAATAACCAGTTTGAAGACTTCGATAATGAATATCTCCACATGGAAGATGTTAAATGTTTGGGGGATGCCAGCGAATTGTACAATGAGACAACCGAGGAATCTATGACTAACACTATTTCCGCTGAAAATGACGACAATTCCATGGATGTGATGGAAACAGGTAGCTTACATGGCGACATAGAGGAGGAATATTTAATAGAAGaaacaatttgttttgaagAATATGATAATGTTGATCTAAATGAGTACCTAGACAAAGCTTTAGTTACCAACTTTGAGGACCTGCAACTAAAATGGGTTGTCGAATGTAAATTATGTCTCTATAAACAATACTCTTTCCAAGAGTTAATAAAGCATCCGTGCATTGACGAACAGATAGATGAACAGCAATGGCCTTGTATTATAAATGACTGTGATGATATCTtcacaaatttaaaatcattaGCCAGACATTTGATAATCAAACATTACAACAATGTCGAAAGTGTCGCAATATATGGTCGCTGTCCGGATTGTCAAAAGCCCTTTTCGAATATTATCGATTTCAATAAACACTCGTGTTGTAATATCAAACGCAAAGCCGGTGCCCGAAATTACTGTCAAACTTGTAGTTTGGATTTTCAGTCGCTGAAAAGATACGTTTTTCACATGCAATTCCATTTAACCAAACACCGCCCCAAACTTTGTGTCCTATGCGGAGCCATGTTTAATAATGCTGACGATTTCTTCGATCATGTCACTTATAGCCATGAACCGGAGACGGCTATGGCGTGTATAAAATGTGACCGTTTCTTTAACGATAAATCGGTTTTCGAACAGCATATGATTTGCCATGATTCAAAATATGCATTTGAGTGCAGACATTGTCCTAAAAAATACACCAATAGAAGTGGTTTAACGGGCCATATGGATGTTTATCATAACCATGAGATGAAAGCCCTACAGTGTGAATATTGCTATAAGGAATTTGTTAATCAATCGAGTTATCGCAGCCACATAAAAGCTCACATGCCCGAGGCTAAAGTACGAGCATACATATGTTCAATTTGTGGTCTAGTGTCAAATAGCAGAGATGTAATTCAGAGCCATTTGGAAACTGATGAATCCTTGTTGGGCCTGAACGgcgaaataattgaaaaaatactcACTGTTGCATTCACCTGTGAATGTTGCTCCATAGATTTCTTTTCCGCTCGATATTTGCAACACCATCGCCTGTCGCCCAAACACAATGAGAAACTCTTCCACTGTCCCATATGCCAAAAAGCCTTTAAAACTCTAAAACACATGCGTAATCATATGACCAGTCATAGAGATTATGATGAATGGCTCAATGCATTTCCAATTGCCAGATTATACATGTGCAATGTCGGCGACTGTCAGGATGCCTATCCACTGTGGTCTTCTCTGTACTATCACAAAAAGCGACACAAAAACACCGAAGAGCCTGCTGATCCATTCAAGTGTCAATTTTGTGAGAAAGTGTGTGGCACGAAAATGTCATTGGCAATACATGTGGCCCGCATGCATAATAATAataATCGAAAATGTCCGCATTGTCACAAATCGTATAAACATGAAAAAGATTTAAACAGGCATGTCGAGCATATTCATGTTTCCGTTCAGTGTCCCAAATGTCGTAAAGTTTTCAAAAGTCGCCGAAATTTGATTTCACACGAGCAATTAGTGCACAAAAATGCAAAGCGTTACTTTTGCAGTCATTGTAATAAGGGATATTATTACAAAAGCGAAATGCAAGCACATGTAAAAAATGTTCACCCCGAAACCTCGTACAAATGTAACCTATGTAATTTTGTTACCAACTATCCAAAATCACTGGACATTCATCATGTGGCCAAACATACGGAAGATTTGCCATTCAAATGCACATCTTGTTCCAAAGGTTTTGCACGTAAGCAACTTTTACTCCTGCACATGAAGCGTCACAAAGCAGATAAAGATTTCATTTGTTACGAATACTGTGAAGATGGTTGCAATGCTTCGTTTATTTCCCATTTTCTGCTGAGGAAACACATTGAAAGTAAACATCCGTCGAAAGACAATGAAAATGGACAGAATAACAAGTCAAAAAGGAGAAAAATCAAAGAgcataacaaaaaccaactaCTTATCGTCGAAGATGACACCGGGGATGTGGAATTAGTACTGGATGAAGATGGTGAAATGGGTAGTGAGGAGGAAGAATATGAACTACATTATGATCATGAAGACGATGACGGTGAGGAAGATGAAATCGTAGACGAGATAGAGAACGAAGGCGAATATGTTTATGCACTTATGGAAACATAA
- Protein Sequence
- MSVVINSTNRGSICIYCKTINSDTEYHDIFDEVGLELQLSSLVRQFFGINVECNRNKQLLCEDCVNRLIELFDLEEHCNEAKIADNNEVPSGKHASLPSQGESSNKNPLLVNNIELSSNYEYVIENDEEILKVVESTEQILNVDDESVATLSNHVEEDEKEGLEQDIAIDSVLNYGESESEFAEDSHIDADNGSIIPDDHIYYETEYTGNVSAGGITNVSLHQIVEEQQIPDEELLLLESASPKIENDVYEEVITMENNQFEDFDNEYLHMEDVKCLGDASELYNETTEESMTNTISAENDDNSMDVMETGSLHGDIEEEYLIEETICFEEYDNVDLNEYLDKALVTNFEDLQLKWVVECKLCLYKQYSFQELIKHPCIDEQIDEQQWPCIINDCDDIFTNLKSLARHLIIKHYNNVESVAIYGRCPDCQKPFSNIIDFNKHSCCNIKRKAGARNYCQTCSLDFQSLKRYVFHMQFHLTKHRPKLCVLCGAMFNNADDFFDHVTYSHEPETAMACIKCDRFFNDKSVFEQHMICHDSKYAFECRHCPKKYTNRSGLTGHMDVYHNHEMKALQCEYCYKEFVNQSSYRSHIKAHMPEAKVRAYICSICGLVSNSRDVIQSHLETDESLLGLNGEIIEKILTVAFTCECCSIDFFSARYLQHHRLSPKHNEKLFHCPICQKAFKTLKHMRNHMTSHRDYDEWLNAFPIARLYMCNVGDCQDAYPLWSSLYYHKKRHKNTEEPADPFKCQFCEKVCGTKMSLAIHVARMHNNNNRKCPHCHKSYKHEKDLNRHVEHIHVSVQCPKCRKVFKSRRNLISHEQLVHKNAKRYFCSHCNKGYYYKSEMQAHVKNVHPETSYKCNLCNFVTNYPKSLDIHHVAKHTEDLPFKCTSCSKGFARKQLLLLHMKRHKADKDFICYEYCEDGCNASFISHFLLRKHIESKHPSKDNENGQNNKSKRRKIKEHNKNQLLIVEDDTGDVELVLDEDGEMGSEEEEYELHYDHEDDDGEEDEIVDEIENEGEYVYALMET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -