Hcyr014959.1
Basic Information
- Insect
- Hydrotaea cyrtoneurina
- Gene Symbol
- -
- Assembly
- GCA_958296145.1
- Location
- OY282515.1:11430939-11433410[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0012 0.081 13.9 1.0 2 23 377 398 376 398 0.97 2 12 0.00092 0.062 14.3 0.4 1 23 404 428 404 428 0.96 3 12 8.2e-05 0.0055 17.6 1.1 1 23 435 460 435 460 0.98 4 12 0.0011 0.077 14.0 0.4 1 23 469 491 469 491 0.97 5 12 0.54 36 5.6 0.8 3 23 501 523 499 523 0.92 6 12 0.0033 0.22 12.6 1.4 1 23 529 551 529 551 0.96 7 12 0.00053 0.036 15.1 0.1 1 23 557 580 557 580 0.97 8 12 0.37 25 6.1 2.3 1 23 596 618 596 618 0.95 9 12 3e-07 2e-05 25.3 4.8 2 23 626 647 625 647 0.96 10 12 3.3e-05 0.0022 18.9 0.7 1 23 654 676 654 676 0.98 11 12 3.5e-05 0.0023 18.8 0.1 1 23 683 705 683 705 0.97 12 12 0.0016 0.11 13.6 0.4 1 23 712 734 712 734 0.96
Sequence Information
- Coding Sequence
- ATGTCTGAACACGAACTCTTCAACAAAAAGTTAATAGAGGAAGTGAAGAAGTATGACTTTATATATAATCTGGCACATCCTGATCGCAGAAAAGGCACTATATCTCAACAGAAATGGTCCGAAATAGCTTCAGCTGTTGAGAGCACTGTCAAGAAATGTAGGTATCGCTGGAACAGTTTACGACGGCGATATATAAGTGAATATTTAAGAATGACATCAGTTAAAGATGACAAAGAATATGAATCTGATTGGAAGTATATGGATGCAATGTCCTTTTTACAAGGCTACGTGGGACAAAACGAaaatttTTTGGAAAGCCTTTCGAAACTGTCGAAGAGGGATGTATTCTGTCGGGCTTGTCTTCACCCATTCGCGAACACGACCGAGCTGAGCTCTGACAGTTACAACATATTCAGTACTGAGCATTTTGCCGAAAAGTTAATGCAGTGCACTAACTTACAAATTGTTCCATGGGATGAATATCCGCATTCGCTTTGTGGAAAGTGTTATGAAAAAGTCTTGGATTTCTGTCGATTTCAAGATATGTGCCATGAATCGCTGGAAAAGTTCATTGTCATTTTGGAAAACCATACGGACATTAAAGAGGACATTAATGACAGTTTTCCTGAGTCTGCGATAGATTATACAGATGTCGATACTGTTTTACGACAAGAACATTCGGTTGATACGCATACAGCACCAGTCGATTATGTTGAACATGGCAACGAAAATAGCgagtttcaaaaacaaaaggaaTATGAAAATGATGGAATTGGGACTGATGATGTTGATCCTTTGGATGGGCGAACAGATACAGAACTGATTTTGGTAGATGAACAAGATATTGATAATCGATCTAAAACAAAAAGCTCACTCAAGAGAGATAATGCGAGCAAAGAAGCCGATACCGCAGCTGCGGCATATcaacaacaatttatattcaacGATGATAATGAAGAAGACGTGATGCAAATAGAATTTATAGAAGAAGATGAATCAGAAAGTGCCACCGAGATTGACaaagatgatgatgaaaaactaGATTTTCATTCAGATGATGAAAATTCTGTTTCAGATGAGTCCGAGACATTAGACGAGAAAGAAAAAACTAGTAGCAGAGTTCCTCTTAAATGTGACAGATGCCCGCAAGCCTTTATTTATCCCCATCGCTTAGAAGCCCATAAGCGGAGACATTTAGGGCTATCAGGATATCCATGTTCGTTTGAAAACTGTTCCCGCGCTTATAATCGATTGAGTGACTTGAGAAATCACCTAAATGACCACAATGGCATTCCCAACGTCTACAAATGCGACATCGACAATTGCAATATGGTGTATTCACGCTATTCTTTGCTAAACAAACACAAGCGGAGAGTACATAAATGCGGCAGAGAATTAAGGACTTACACGTGTGAAATGTGCGGCAAAGGTTTAACAAGTCTACGTTCACTTAAAGGCCATCGGTTTATACATGTAGATAAATCCCAATGGCCTTACGGCTGTGATGAAAAGGACTGCACCGTTAGATTCAGATTCTTGGcacaaaagaaaatacatttgaaacgTCATGCCGGCATAAAGGATTTTATTTGCCCTCACTGTGGTATGCGCAAAACCACAAGTACTGAACTTAAGATTCACattaattttcacacatttgaacaaaaatatcCATGTCGAATATGTTCGAAAGTTTTCAAAAGTGTGGGTACGATGGGTACACATATTCGTATGGTCCACgaaggaaaacaaaagaaagcgATGGAGGCTACAAATGGTGCAAAGTTTCAGTGTAGTTTTTGTGATCGCAAATTAAGTTCAGCGCAGAccaagaaatatcatgaaatgaATCATACAGGAGAACAAAAACCATGTGTATGTGATAAATGTGGCAAAACATTCACAAGGCCCTCCCATTTAAAACAGCACCAGCTTATGCATGCTAATGGTGAAAAGCCCTATGTATGTGAGGAATGCGGCGTAAGATATAAATGGCCATCGCACTTAAAGACGCATATGAAGATTCATTTGGAAGGAGCAAACCCGTATCCTTGTGAAGTATGTGGTAAAAGATTTAAGTGGCCAGGTAACTTAAAGTCACATTTGCTGTTACATACGGAAGGGTTAACACCGTATACATGTGAGGAATGCGGTAAAGGATTCAAATGGCCGGGGTCTTTTTACAACCACAAGAAAGCGCACATGAAACAGAAAAATGAAACTACACAAGAAGTAGAATATGTATCAGACGAACCCTTGGATCCATAA
- Protein Sequence
- MSEHELFNKKLIEEVKKYDFIYNLAHPDRRKGTISQQKWSEIASAVESTVKKCRYRWNSLRRRYISEYLRMTSVKDDKEYESDWKYMDAMSFLQGYVGQNENFLESLSKLSKRDVFCRACLHPFANTTELSSDSYNIFSTEHFAEKLMQCTNLQIVPWDEYPHSLCGKCYEKVLDFCRFQDMCHESLEKFIVILENHTDIKEDINDSFPESAIDYTDVDTVLRQEHSVDTHTAPVDYVEHGNENSEFQKQKEYENDGIGTDDVDPLDGRTDTELILVDEQDIDNRSKTKSSLKRDNASKEADTAAAAYQQQFIFNDDNEEDVMQIEFIEEDESESATEIDKDDDEKLDFHSDDENSVSDESETLDEKEKTSSRVPLKCDRCPQAFIYPHRLEAHKRRHLGLSGYPCSFENCSRAYNRLSDLRNHLNDHNGIPNVYKCDIDNCNMVYSRYSLLNKHKRRVHKCGRELRTYTCEMCGKGLTSLRSLKGHRFIHVDKSQWPYGCDEKDCTVRFRFLAQKKIHLKRHAGIKDFICPHCGMRKTTSTELKIHINFHTFEQKYPCRICSKVFKSVGTMGTHIRMVHEGKQKKAMEATNGAKFQCSFCDRKLSSAQTKKYHEMNHTGEQKPCVCDKCGKTFTRPSHLKQHQLMHANGEKPYVCEECGVRYKWPSHLKTHMKIHLEGANPYPCEVCGKRFKWPGNLKSHLLLHTEGLTPYTCEECGKGFKWPGSFYNHKKAHMKQKNETTQEVEYVSDEPLDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -