Basic Information

Insect: Hydrotaea cyrtoneurina
Gene Symbol: -
Assembly: GCA_958296145.1
Location: OY282514.1:78430953-78434029[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.065 4.4 8.5 0.3 1 20 19 38 19 43 0.92

2 16 7.7e-05 0.0052 17.7 0.7 1 23 91 114 91 114 0.96

3 16 0.0017 0.11 13.5 5.3 1 23 120 143 120 143 0.96

4 16 0.00098 0.066 14.2 2.0 1 23 154 177 154 177 0.95

5 16 1.7e-05 0.0011 19.8 2.5 1 23 285 307 285 307 0.98

6 16 0.0004 0.027 15.4 3.0 1 23 313 336 313 336 0.89

7 16 0.11 7.6 7.7 0.1 2 23 345 366 344 366 0.95

8 16 0.047 3.1 8.9 4.1 1 19 374 392 374 395 0.93

9 16 0.002 0.14 13.2 0.3 1 23 432 454 432 454 0.98

10 16 0.00046 0.031 15.3 1.7 1 23 460 482 460 482 0.98

11 16 4.8e-06 0.00032 21.5 3.3 1 23 488 511 488 511 0.96

12 16 0.14 9.2 7.5 7.5 1 23 518 540 518 540 0.99

13 16 1e-05 0.0007 20.4 0.7 1 23 600 623 600 623 0.95

14 16 0.0056 0.38 11.8 0.9 1 23 629 651 629 651 0.98

15 16 1.7e-06 0.00011 22.9 0.7 1 23 658 680 658 680 0.98

16 16 0.00025 0.017 16.1 7.4 1 23 686 709 686 710 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.065	4.4	8.5	0.3	1	20	19	38	19	43	0.92
2	16	7.7e-05	0.0052	17.7	0.7	1	23	91	114	91	114	0.96
3	16	0.0017	0.11	13.5	5.3	1	23	120	143	120	143	0.96
4	16	0.00098	0.066	14.2	2.0	1	23	154	177	154	177	0.95
5	16	1.7e-05	0.0011	19.8	2.5	1	23	285	307	285	307	0.98
6	16	0.0004	0.027	15.4	3.0	1	23	313	336	313	336	0.89
7	16	0.11	7.6	7.7	0.1	2	23	345	366	344	366	0.95
8	16	0.047	3.1	8.9	4.1	1	19	374	392	374	395	0.93
9	16	0.002	0.14	13.2	0.3	1	23	432	454	432	454	0.98
10	16	0.00046	0.031	15.3	1.7	1	23	460	482	460	482	0.98
11	16	4.8e-06	0.00032	21.5	3.3	1	23	488	511	488	511	0.96
12	16	0.14	9.2	7.5	7.5	1	23	518	540	518	540	0.99
13	16	1e-05	0.0007	20.4	0.7	1	23	600	623	600	623	0.95
14	16	0.0056	0.38	11.8	0.9	1	23	629	651	629	651	0.98
15	16	1.7e-06	0.00011	22.9	0.7	1	23	658	680	658	680	0.98
16	16	0.00025	0.017	16.1	7.4	1	23	686	709	686	710	0.96

Sequence Information

Coding Sequence: ATGGAGAATATTGTTCGAATTATAAGTGATATTCGACTAAACGATCGACCACCCTATACGTGTTTAATCTGTGACCAAATTATCTCCAATATTTACCAGTTACGCGAACATTATTACTACGATGATCATATGAACTCCAATACAAGTCTGGTGGAAAATGATGGAAATGTAGATACAAATTACAGCCAGTTGAATGAGCCGGCATCTGGGAGAGAgagtattaaaaaaagtattgcaaaaCAGAAAAGAATGTCGAAAGGAAAAGGAGACTTCGAGTGTCCTTTATGCAACAAATATTTCGCCCAAAAATCGTCTCGTGCTCGTCACGTTCGGGAACAGCATGAAAACCCGGAGAAATTTGCATGTGATCTATGTGAGCTAAGATTTTGTAACAAATTCAACCTACAAACGCATCATAAACGTGCCCACTccaaaaaactggaaaaaaccAATAGTGCCTTCAAATGTCCTCACTGCCCATGTGCATATGGGACACAAATCGCTTTGACCAGACACAAAAATGGACAACATAAAAACCACATGCAATCCGAAAAACTTCTAACAGAATCCTCACTACAATGCGCCCTGAATAGAACGGAAGAAAATGATCCTCAAAGTCTTGCGGAAAGTGTACTAAAAGAGCTTAAGCAGCTACAGAAAGCAATTGAAAACACCGAGCTTGGCAATCAATCGCCAAAAAGTACAGAAAACTCGAATCAATCTACAGCACAAAAAACTTCAATCGATGATGCAATAGTTGAAGAGGTAGTTATAAAAGATAGCCTGTTCCCCTTCAAAAATGTAACGGAATATAAAGTACAGAAGATCAAGAGGTCTGATGGTTTATGCTATTATGTCTGTGAATATTGTAGCAAAGAATTTCGAAAGTCCTATAACTACTTAAGtCATCGAAGAATCCACACCAAGCTTCGCCCTTTCATCTGTGTTTTATGTAAAAAAGCATTTCCCACACAAAGTCAATTGAAACGTCATTGCTCCACAAGGCATAGGAcattgaaaacgaattgtctTAAGTGTCCAAAATGTTTGGAAGGTTTCGCCACAATTACTCTGTTCGATAAACACTTGAGTGCGCATTTGCCACATTCGCTTATCAAGTTCAATTGCAAACAATGCTCGAAGAcatttaaatcattaaaattatatttcgcCCATAATCATAAAGAGATTGATCCAGAATTGGACATGTTGAAAACGCTTTTGCCGTCCCCCATATATGTGCTAGAAGATGGGAAAACGGGTCAGGTGTCGAATGAGAAGGCCGTGGGAGTGTTTCGGTGTTTCATTTGCGGTGTAGAGCTTTCTTCGTCTGTTGGTCTAAAACAACATGAAAAACGCCATCAAACGTTGTGGAAATATCAGTGCAATGTATGCAAAGGTTTTTATGCCTCCAAATCGTCCTTGAAGGTGCACACAAAATATCATCTGAATTTACGTAACTTCAAATGCAACCAGTGTCCTAAAATGTTTCGTACAAAATTTCAACTTAATCGGCATAAACTAATAAGACACGGTGCAGcggaaaaaaactacaaatgtCGGTACTGTGATAGACATTTTAAAATCGCACAATACTGTCGAAGTCATATGATGACACATATAAAACAATTGTTACAAAAACCAAAGGAAACAATCATAAACGAAGAAAGCAATGTGACCACCATAATAGAAAACACCGATAAGGAGCAACGGTTAATACAGGAATTGAAAATTCCCATAAAGACCAAACGGAAAGTAGTAGATGCtaaaacaaatgataaaaatctGCAATTACCCTACAAATGTTCAAATTGTCCACGATCGTATCGTTACAATGCCTGGCTCAAGAAACATATGGCAGAATCTCACTCCAATGAAAGACCCTACAAATGCACTGTCTGCCTTAAAGACTTTCGCAAAAATCAGATATTGGAGAAACACCTATTAATCCACAATAAAGACAGAGTACAATTCACTTGCCAGGTTTGCGGCAAGCAATACGCCACCAATAAATCATTGAAAGTTCACCTGCGTATACATACCCAAGAAAAGGCGTTTGAGTGTGAATTGTGTACGAAATTCTTTAGAACGTCGGGTCATTTGAAAGCACATCACAAATCAAATCATCACAATAAgatctaa
Protein Sequence: MENIVRIISDIRLNDRPPYTCLICDQIISNIYQLREHYYYDDHMNSNTSLVENDGNVDTNYSQLNEPASGRESIKKSIAKQKRMSKGKGDFECPLCNKYFAQKSSRARHVREQHENPEKFACDLCELRFCNKFNLQTHHKRAHSKKLEKTNSAFKCPHCPCAYGTQIALTRHKNGQHKNHMQSEKLLTESSLQCALNRTEENDPQSLAESVLKELKQLQKAIENTELGNQSPKSTENSNQSTAQKTSIDDAIVEEVVIKDSLFPFKNVTEYKVQKIKRSDGLCYYVCEYCSKEFRKSYNYLSHRRIHTKLRPFICVLCKKAFPTQSQLKRHCSTRHRTLKTNCLKCPKCLEGFATITLFDKHLSAHLPHSLIKFNCKQCSKTFKSLKLYFAHNHKEIDPELDMLKTLLPSPIYVLEDGKTGQVSNEKAVGVFRCFICGVELSSSVGLKQHEKRHQTLWKYQCNVCKGFYASKSSLKVHTKYHLNLRNFKCNQCPKMFRTKFQLNRHKLIRHGAAEKNYKCRYCDRHFKIAQYCRSHMMTHIKQLLQKPKETIINEESNVTTIIENTDKEQRLIQELKIPIKTKRKVVDAKTNDKNLQLPYKCSNCPRSYRYNAWLKKHMAESHSNERPYKCTVCLKDFRKNQILEKHLLIHNKDRVQFTCQVCGKQYATNKSLKVHLRIHTQEKAFECELCTKFFRTSGHLKAHHKSNHHNKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -