Hcyr010556.1
Basic Information
- Insect
- Hydrotaea cyrtoneurina
- Gene Symbol
- -
- Assembly
- GCA_958296145.1
- Location
- OY282513.1:96571354-96576085[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.022 1.5 10.0 5.0 1 23 232 255 232 255 0.92 2 16 0.013 0.87 10.7 0.5 1 19 271 289 271 293 0.89 3 16 1.4e-05 0.00095 20.0 0.5 3 23 298 318 296 318 0.96 4 16 0.0016 0.11 13.6 3.9 1 20 324 343 324 346 0.95 5 16 0.00013 0.0087 17.0 0.4 2 23 353 374 352 374 0.96 6 16 0.00043 0.029 15.3 3.2 2 23 381 402 381 402 0.97 7 16 6.2e-05 0.0042 18.0 0.8 1 23 408 430 408 430 0.98 8 16 5.7e-08 3.8e-06 27.5 0.9 1 23 436 458 436 458 0.97 9 16 2.7 1.8e+02 3.4 4.4 1 23 652 675 652 675 0.89 10 16 0.016 1.1 10.4 0.5 1 19 691 709 691 713 0.89 11 16 2e-06 0.00014 22.6 0.5 3 23 718 738 716 738 0.96 12 16 0.0024 0.16 13.0 3.5 1 20 744 763 744 766 0.96 13 16 0.00028 0.019 16.0 1.9 2 23 773 794 772 794 0.96 14 16 0.00043 0.029 15.3 3.2 2 23 801 822 801 822 0.97 15 16 6.2e-05 0.0042 18.0 0.8 1 23 828 850 828 850 0.98 16 16 4.5e-07 3e-05 24.7 1.0 1 23 856 878 856 878 0.97
Sequence Information
- Coding Sequence
- atgctaaaattggATAATTCCAGCtcctttcaaaatttcaaatgtgGAGAAATCTTCTGTATATCGCCTGCGGTTTTTAATGTAACCTGTTTGCTTTGTCCCCGTAAAATGCATTTggaaaaattcactacacacTTCCAAATCCATCATCTTCCGCTAGCTGAGCAAAGCATTAATCTGAATGATTTGGATAGGAAACGCAAATCTAAATTAGAAAAGGATGCCTCTTTGCTGGATAACATGTCAATCAAAGAAGAAGACCCTGAAGTCGATCCCATAAAGCAAGAGGATTTCAGAGGCAAAATATCAACACCTGTCGCTGAGGATAAGGCGGCCGAAGGCAGTGATGATGACGATAAAAGTCTACAACAGTTAATACATGAAACTGAAGTGGGAAATCATGAGACTATTGTTGAACAATTACACATGGAGGAAATACCAAGAAAACCTTTTACCAGAAACGCCAAGAAAGGCCGAAATGATTGCGAAGATAAAACAATGTTTAAGGATGAGGAAACTAAAAGAAAAGACTCTGATGCTGATGCTCTAAATATAAATAAGGATGACATATTTAATAATGATTACGAAGATGACAACGGCAACGATGATAATGAATGGGCGGACAATGATGGAAATATGGATACGAACAGCAGTAAAtCAGAGATCGACAAAAACTCTGAAGATGAACTTCCGTATCCCTGTCTCACCTGCAAACGTTCATATCGGACCAAAAACTGCTTGCAAAAACATAACTACAGAGTTCACAATCCCAAAAAAACGCCAATTATGTCAGGACAACATAAACCGATACACAAATGCGATGAATGCAATGAGGTTTTCCGTTCGGCACGAGAACTGGGGGGACACAAATGGAAGCATACGGGAATATTTTGTGATATTTGTGGCAAATCCTTTACCCAGACCGGTAATATGATTCGTCATAAAATTCGTCACACAGGTATTAAGGCCCATAAATGCAATGAAtgttccaaagatttttttacGGCCAAAGAGCTCAAAGCGCACATGATTTGCCACACCGGTTTAATGCCATTAATATGCGAAATTTGCGGAAAAAGATGTAGAGATGGTGGTGTACTGACAGCTCACATGCGTCGGCATACGGGAGAAAGACCGGCTAAATGTCATGTATGCGGTAAAAGTTTCTTCTCCTTCCACGACTTAAACGTACATGCGGTCACACACACCAGTGAGCGGCCATTTAAATGCGATATATGCGGCTCAACATTTCAGCGCAAGAAAGCTTTACGCGTACATAAACTAATACACTCTAAGGATcgaaaacatatttgtaaaatCTGTGGAAAATCGTTTGCCCAATCGGGAGGTTTAAATTCTCACATGCGTACACATGATGCCGCCGTGCAGAGATCGGGTACCGAGTCAACATCCGTGCATATTCCAACACTCGTGTTAGCAAGTCTAGGTAATCAGACATCTGCGGCGAGTGCGACTTGCACGATAAATGAGATTGTGGATAACAGTGTTGTGGAAGAAGTGCAGATATCGGGCGAATATATTCAAGAGGATTTCAGAGGCAAAATATCAACACCTGTCGCTGAGGATAAGGCGGCCGAAGGCAGTGATGATGACGATAAAAGTCTACAACAGTTAATACATGAAACTGAAGTGGGAAATCATGAGACTATTGTTGAACAATTATACATGGAGGAAATACCAAGAAAACCTTTTACCAGAAACGCCAAGAAAAGCCTAAAAGATTCTGAAGATAAAACAATGTTTAAGGATAAGGAAACTAAAAGAAAAGACTCTGATGCTGATGCTCTAAATATAAATAAGGATGACATATTTAATAATGATTACGAAGATGACAACGGCAACGATGATAATGAATGGGCGGACAATGATGGAAATATGGATACGAACAGCAGTAATtcAGAGATCGACAAAAACTCTGAAGATGAACTTCCGTATCTCTGTCTGACCTGCAAACGTTTATATCGGACCAAAAACTGCTTGCAAAACCATAACTACAGAGTTCACAATCCCAAAAAAACGCCAATTATGTCGAAACAACATAAACAGATACACAGGTGCGATGAATGCAATGAGGTTTTCCGTTCGGCACGTGATCTGGGGGGACACAAATGGAAGCATACGGGAATATTTTGTGATATTTGTGGCAAATCCTTTACCCAGACTGGTAATTTGATTCGTCATAAAATTCGTCACACAGGTATTAAGGCCCATAAATGCAATGAAtgttccaaagatttttttacGGCTAATGAGCTCAAAGCGCACATGGTTTGCCACACTGGTTTAATGCCATTAATATGCGAAATTTGCGGAAAAAGGTGTAGACATGGTGGTGTACTGAGAGCTCACATGCGTCGGCATACGGGAGAAAGACCGGCTAAATGTCATGTATGCGGTAAAAGTTTCTTCTCCTTCCACGACTTAAACGTACATGCGGTCACACACACCAGTGAGCGGCCATTTAAATGCGATATATGCGGCTCAACATTTCAGCGCAAGAAAGCTTTACGCGTACATAAACTGATACACTCTAAGGATcgaaaacatatttgtaaaatCTGTGAAAAATCGTTTGCCCAATCGGGAGGTTTAAATTCTCACATGCGTACACATGATGCCGCCGTGCAGAGATCGAGTACCGAGTCAACATCCGTGCATATTCCAACATTTGTGTTAGCAAGTCTAGGTAATCAGACATCTGCGGCGAGTGCGACTTGCACGATAAATGAGATTGTGGATAACAGTGTTGTGGAAGAAGTGCAGATATCGGGCGAATATATTGTATAA
- Protein Sequence
- MLKLDNSSSFQNFKCGEIFCISPAVFNVTCLLCPRKMHLEKFTTHFQIHHLPLAEQSINLNDLDRKRKSKLEKDASLLDNMSIKEEDPEVDPIKQEDFRGKISTPVAEDKAAEGSDDDDKSLQQLIHETEVGNHETIVEQLHMEEIPRKPFTRNAKKGRNDCEDKTMFKDEETKRKDSDADALNINKDDIFNNDYEDDNGNDDNEWADNDGNMDTNSSKSEIDKNSEDELPYPCLTCKRSYRTKNCLQKHNYRVHNPKKTPIMSGQHKPIHKCDECNEVFRSARELGGHKWKHTGIFCDICGKSFTQTGNMIRHKIRHTGIKAHKCNECSKDFFTAKELKAHMICHTGLMPLICEICGKRCRDGGVLTAHMRRHTGERPAKCHVCGKSFFSFHDLNVHAVTHTSERPFKCDICGSTFQRKKALRVHKLIHSKDRKHICKICGKSFAQSGGLNSHMRTHDAAVQRSGTESTSVHIPTLVLASLGNQTSAASATCTINEIVDNSVVEEVQISGEYIQEDFRGKISTPVAEDKAAEGSDDDDKSLQQLIHETEVGNHETIVEQLYMEEIPRKPFTRNAKKSLKDSEDKTMFKDKETKRKDSDADALNINKDDIFNNDYEDDNGNDDNEWADNDGNMDTNSSNSEIDKNSEDELPYLCLTCKRLYRTKNCLQNHNYRVHNPKKTPIMSKQHKQIHRCDECNEVFRSARDLGGHKWKHTGIFCDICGKSFTQTGNLIRHKIRHTGIKAHKCNECSKDFFTANELKAHMVCHTGLMPLICEICGKRCRHGGVLRAHMRRHTGERPAKCHVCGKSFFSFHDLNVHAVTHTSERPFKCDICGSTFQRKKALRVHKLIHSKDRKHICKICEKSFAQSGGLNSHMRTHDAAVQRSSTESTSVHIPTFVLASLGNQTSAASATCTINEIVDNSVVEEVQISGEYIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -