Hcyr000049.1
Basic Information
- Insect
- Hydrotaea cyrtoneurina
- Gene Symbol
- -
- Assembly
- GCA_958296145.1
- Location
- OY282512.1:123774-128695[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.013 0.88 10.7 1.9 1 23 58 81 58 81 0.94 2 23 4.2e-05 0.0028 18.5 4.5 1 23 87 110 87 110 0.97 3 23 0.00022 0.015 16.3 2.2 1 23 215 238 215 238 0.97 4 23 4.6e-05 0.0031 18.4 1.0 2 23 269 290 268 290 0.97 5 23 0.04 2.7 9.2 2.5 1 23 368 391 368 391 0.95 6 23 0.65 44 5.3 0.6 2 23 399 420 398 420 0.96 7 23 0.00016 0.011 16.7 0.5 2 23 462 483 461 483 0.96 8 23 0.00045 0.031 15.3 0.7 2 23 496 517 495 517 0.96 9 23 0.0068 0.46 11.6 1.5 1 23 589 612 589 612 0.93 10 23 0.00051 0.035 15.1 0.7 1 20 619 638 619 640 0.95 11 23 0.29 20 6.4 0.3 2 23 652 674 651 674 0.92 12 23 0.00016 0.011 16.7 0.3 2 23 689 710 688 710 0.97 13 23 1.4e-06 9.1e-05 23.2 1.7 1 23 716 738 716 738 0.98 14 23 0.011 0.71 11.0 5.8 1 23 987 1010 987 1010 0.95 15 23 0.003 0.2 12.7 3.6 1 23 1017 1039 1017 1039 0.97 16 23 0.0085 0.57 11.3 2.5 1 23 1142 1165 1142 1165 0.97 17 23 0.0062 0.42 11.7 0.9 1 23 1202 1225 1202 1226 0.96 18 23 0.1 7 7.8 6.1 1 23 1257 1280 1257 1280 0.97 19 23 1.1e-06 7.4e-05 23.5 0.6 2 23 1307 1328 1306 1328 0.95 20 23 2.7e-06 0.00018 22.3 0.6 1 23 1334 1356 1334 1356 0.99 21 23 4.8e-07 3.2e-05 24.6 4.6 1 23 1362 1384 1362 1384 0.98 22 23 1.7e-05 0.0012 19.7 5.2 1 23 1390 1412 1390 1412 0.98 23 23 0.1 6.7 7.9 0.7 1 22 1418 1439 1418 1442 0.88
Sequence Information
- Coding Sequence
- ATGGATGATGACGACGAAGACTATAGACAGGTATCATCTTCAAATGAAAGCAGTCATGAACCggctaacaaaataaaaacggaaGGCATAGGgcaaagcaaaattaaaaaacggaGAGTAAGGCGACCACTTCCGGACTACTTtcacaagataaaaaaaattaaagataggTTTGCATGTTTTATGTGTGAAAAGACTTTCTCCCAACGTAAAGATTGCGCGAGACATATCGCATCGATACATTTGCGAGAAACTGCATTCCCATGTGAATATTGTGATCAAAAGTTTTGTCGTAAAGACAAGGTTCAACGGCATATGAAACGCATGCACTCGGACAGGACTATATACTCCAAAAGGCCTCTTGAAATCGGAGATGAAAGAAATGACCATGAAAATGATGAAGACAGCAAACACGCATCATCTTCAGACGAGAGCAATTACGAACACAATGAAAAGGGAAATGCCGAATGTGAAGGcAAAATAAGCCCTAAGAAACGTAAAGTTGGAAGACAGCCtcctgattactttgataaaaTAAAGAAAGTTGATGACAGATATGCCTGCCTTATGTGTGAGAGCACATTCTCTTTGCGCAAAGACTGTGGACGACACATAGCATCGATACATTTGCGAAAAACTACATTCCCTTGTGAATATTGTGGCCAACATTTCGGTCGCAAAGATAAGGTTCGGACCCATATTAAACGTATGCACTCGGATAGATGTGTGTATCCTAGAAGCAAACGCAAGGAATGGACATTCGGAGATCGTATTTATAGTAAACCTACGGGATGGTTACTTGTGGAATGTAAACTTTGTAATACAGCATTCAAAACAACCAAAGAATTAAGGACTCATATGGAGACGCATAGCGACATTGATACTCTTAGTCAGTTACAAATGGACAGTGAAGTGGTCAAGTATTTGTTCTCTAATGTCctatatttggaaaatgtgaaGGAAAGTATATGTAAAGACATCAGCGAACGGCAGTGGTTCAAATACTATGCGGTATTAAATGAGTATTCATATGAGCTATCAATTAGTGATACTGAAGTTGAGGACTTGTACACCGAGCAGAATACTTCGGACCGACCAAAGTATAACTGCGATTTATGTGGTCTGATGTTTTGCTTTCAATATGAAGCATTCaatcatttaaaagaaaaacatgaaaacgacgaaattccaacaaaatgtgGTTTATGCAAACTAGAATTTATATCGTCGAAAATGTACGACCAGCACTCGCAAGTGCACTGTCGGAACAGGCATAAGATTTTACTTTGCACGGGATGCCCAGCTAAGTTTGTTTGGCCCGAAAGTATGAAAAACCATAATTGCGCGGAACAGGAGTCTGCAGCAACCgataaagaaattttgaaatgtaataTATGTGATCGGCCATTTGAAGTCAAGACGAAACTGCAAAAACATTTGGAATTGCATAATCTTGACAGTAAGCTAGTAACGAAAGGCGTAATACAATGCGGTCTTTGTACGCAATCTTTCGAAAGACTTAAAACACTGCGTAAGCATATCACAGTCCATGCAGATGGAACGACTGGTATAGATTTCAAAAACGGCACTTATTTCAGaagatttgaaaaatcaaaaaccacAGATCGCGCTCTTTTGCAACAAGAAATACGAAATGGTTTCGAAAAGTCGCAAATAAGTCGATATTATAGAGCCATTGACAATGCCGGTAACGAAATGGACATTTTAGATTCAGATAGCGGATCTGAAGATGACAAGCCCGAGTACAAATGTGAACTTTGTCTGACGATTTTCAGCAGAAGGAAGTACTTGTTGAGTCACCAATTCGAACTCCATAACGATGTTCCTTTACCGTATACATGCAAAGATTGCACAAAGCAATATGTGAGCAATGACTTGTTGCAACAACATTTGTACAGGGACTGTTGGAATGAGCACCGACGTGTGGCTCAGCAATGTGAATATTGTAATGCACGATTCATTTGGCCCAATAATATGACTAAACATAAAGACATTCAGcACAAACACCAGAAACAACCTAAGCCGAAACGAGCGAGCACATTGAAATGTGAGTATTGCGAAAAGGTATTCATATGGCCGAAAGACTTGGTGAGACATCGAAGAACCCATACAGATGGCAAAAAGTTTTCATGTCCTCATTGTGAGCGTAAATTTCAACGTAAAGACAACTTGCTTGCCCATATACGTATTCATGACCCGGATGGAATAACattaatttccaattcaaacAAAACAGTGGATCATATTTTGCAACATTTGATTAAACCACATGGGTGTAAACGAATAAAATGTATGATATGCTACTCAGAGCACAATCGCGTATGTGACTTACGATCACATTTGCGCTCGCATCAGTATtctattgattttgaaaaaagaaaagaaactgaAGCTTTTGGGTATATATCTAAACAATTATACCCTGAGGATAGTCCCATGAACGAAGaagaattgttcaaaaaaattgcatatgatATTGTTGCTGAAAGAAATTTGGAACGATTTTACTCGATCACCAATGAAAATGGTTACGAGGTCAGTTTAGATAGTTCGGAAACTGAAAGTGATACAGATGATGAAACAAATGACAAGGGCGACAGCAAAGATCACAGTAATATGAATTTGGTCATGTCTAGGCGAACATATACGTGCGATGTATGTCCACATCTGACTTTCGATCGCAAATATAAGGCTTTTGAACATCACCATAATGTACATAAATGGGAGGACGGTCGTCATGTTTGCATACACTGTAATGGACGATTTATTTCATCACACATATTGCAGTTGCACTACAAAAATCAGTGTAAGAATACGAAAAAACGTCACTTTTGTCGACGGTGCCCGCTACGTTTTATGTGGAAAAATAACCTTAAGACTCATTTTGTAATGGACCATTCGCAGGAGATGGCAAAAGAGataGAAATGAGCCGACGCTTTGTGTGCTTTTTATGTCAACGTAAATGCAGTTCACAAAAAGATCTTACGCATCATATGTCGTTAAATCATCCCGCTGATTCTGAGCTGCACTATTGCCTTCTATGTCCTAAAACATTTTATACAGTTGAACATCTTAACGACCATTTGTCACGACATAGCTTAGACCCCAACCATGTCAGttgtattgaaagtattacacatTCGACGTGCTGGCCTAATGGCAAAAAAGAGGTGAAATGCAAAGTTTGTGCCCTGGAATTCCAAACTATGGCAGAGATAGCAGAACACTTCTCCCCAGCAAATCCTCAAAACATATGTACAGTTCAACATTCAATAGCCAACTACTcaataacaaatcaaaaagGATTCGAATTAAACTTAGATTTAGACTCCGAAACAGAATCCGAAGATACACTAACGAAGGTCAGAGATCAAGGAGACCAAGGAAACACACATAAACAGTACATGTGTTCCTTGTGCAACGTCACGTGTGGTCGCAAATACCAAATGGCTCAGCATCAACGTTCTATGCACAGTTATGAGAGTTTAACTTTAAAATGCGAGAAATGTGTTTTCAAAACAGCATGCCAGAAGCTTTTGGAATATCACACAGCAACTCAGTGTTATGATGTAGAGAAACAATATCAGTGCGATATCTGTAAATTCAAGTTTATGTGGCAAGAAAATCTTCAGAATCACATTGCTATTTTGCATCATCCAACAACTGTCCACAACATCGGACAGATCGAAGATCAGATGGACTCCAAAGCTCTGGACTGGAATCAGCAAACCAATAGAAATGATATCTTCGAATGTATGGATTGTCACCGTCGGTACAACAGAAGGGACCGTTACAAagcacattttaaaaaattccataacaACGACGAATGCCAAGACGAATCCTCAAAGACTAAGGATCGCAGAAAACCTTCTCCGAGCAAGGCTAAGAACTTCTTATGTGCCTTCTGCGGTGTTTCATTTTCTAGCAACTCAAATCTTACCGTGCACATGCGGCGACATACGGGTGAAAAGCCATTCAAATGTGACCTTTGCGAAATGGCGTTTCCCCGTTCATCAGACTTACAGTCTCATCGACGCACACACACTGGCGAAAAACCGcacaaatgtacatattgcgaaaaatcattttcgagacaatataaattaaatgtacATATGCGCATACATACTGGCGAACGTCCGTATTCATGCACGTATTGTTCAAAAAGTTTTACTCAGTCCAACGATTTGACTCTACACCATCGTCGCCACACGGGTGAAAGACCATATCTGTGCGACATTTGCGGAGAAGGTTTCATTTGTGCTACTTCATTAAAACAACATCGAAACTCCAAAGGTCATATGGAGCACCATGTAGACGCAGAAGGGGCACGGAATTTACcacattttgaaatgaatttttga
- Protein Sequence
- MDDDDEDYRQVSSSNESSHEPANKIKTEGIGQSKIKKRRVRRPLPDYFHKIKKIKDRFACFMCEKTFSQRKDCARHIASIHLRETAFPCEYCDQKFCRKDKVQRHMKRMHSDRTIYSKRPLEIGDERNDHENDEDSKHASSSDESNYEHNEKGNAECEGKISPKKRKVGRQPPDYFDKIKKVDDRYACLMCESTFSLRKDCGRHIASIHLRKTTFPCEYCGQHFGRKDKVRTHIKRMHSDRCVYPRSKRKEWTFGDRIYSKPTGWLLVECKLCNTAFKTTKELRTHMETHSDIDTLSQLQMDSEVVKYLFSNVLYLENVKESICKDISERQWFKYYAVLNEYSYELSISDTEVEDLYTEQNTSDRPKYNCDLCGLMFCFQYEAFNHLKEKHENDEIPTKCGLCKLEFISSKMYDQHSQVHCRNRHKILLCTGCPAKFVWPESMKNHNCAEQESAATDKEILKCNICDRPFEVKTKLQKHLELHNLDSKLVTKGVIQCGLCTQSFERLKTLRKHITVHADGTTGIDFKNGTYFRRFEKSKTTDRALLQQEIRNGFEKSQISRYYRAIDNAGNEMDILDSDSGSEDDKPEYKCELCLTIFSRRKYLLSHQFELHNDVPLPYTCKDCTKQYVSNDLLQQHLYRDCWNEHRRVAQQCEYCNARFIWPNNMTKHKDIQHKHQKQPKPKRASTLKCEYCEKVFIWPKDLVRHRRTHTDGKKFSCPHCERKFQRKDNLLAHIRIHDPDGITLISNSNKTVDHILQHLIKPHGCKRIKCMICYSEHNRVCDLRSHLRSHQYSIDFEKRKETEAFGYISKQLYPEDSPMNEEELFKKIAYDIVAERNLERFYSITNENGYEVSLDSSETESDTDDETNDKGDSKDHSNMNLVMSRRTYTCDVCPHLTFDRKYKAFEHHHNVHKWEDGRHVCIHCNGRFISSHILQLHYKNQCKNTKKRHFCRRCPLRFMWKNNLKTHFVMDHSQEMAKEIEMSRRFVCFLCQRKCSSQKDLTHHMSLNHPADSELHYCLLCPKTFYTVEHLNDHLSRHSLDPNHVSCIESITHSTCWPNGKKEVKCKVCALEFQTMAEIAEHFSPANPQNICTVQHSIANYSITNQKGFELNLDLDSETESEDTLTKVRDQGDQGNTHKQYMCSLCNVTCGRKYQMAQHQRSMHSYESLTLKCEKCVFKTACQKLLEYHTATQCYDVEKQYQCDICKFKFMWQENLQNHIAILHHPTTVHNIGQIEDQMDSKALDWNQQTNRNDIFECMDCHRRYNRRDRYKAHFKKFHNNDECQDESSKTKDRRKPSPSKAKNFLCAFCGVSFSSNSNLTVHMRRHTGEKPFKCDLCEMAFPRSSDLQSHRRTHTGEKPHKCTYCEKSFSRQYKLNVHMRIHTGERPYSCTYCSKSFTQSNDLTLHHRRHTGERPYLCDICGEGFICATSLKQHRNSKGHMEHHVDAEGARNLPHFEMNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00817675;
- 90% Identity
- -
- 80% Identity
- -