Basic Information

Insect: Hydrotaea cyrtoneurina
Gene Symbol: -
Assembly: GCA_958296145.1
Location: OY282513.1:95104808-95107455[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7.9e-05 0.0053 17.7 4.0 1 23 162 184 162 184 0.98

2 14 3.5e-05 0.0023 18.8 2.1 1 23 190 212 190 212 0.98

3 14 5e-05 0.0034 18.3 0.3 1 23 318 340 318 340 0.96

4 14 0.00013 0.0089 17.0 2.9 1 23 346 368 346 368 0.96

5 14 4.4e-06 0.0003 21.6 0.6 1 23 386 408 386 408 0.98

6 14 0.071 4.8 8.4 1.1 1 23 417 440 417 440 0.94

7 14 0.00071 0.047 14.7 4.7 1 23 446 468 446 468 0.98

8 14 0.00023 0.016 16.2 0.1 2 23 475 496 474 496 0.96

9 14 8e-08 5.4e-06 27.1 0.5 1 23 502 524 502 524 0.96

10 14 0.00029 0.02 15.9 2.0 1 23 530 552 530 552 0.99

11 14 7.7e-06 0.00052 20.8 2.4 1 23 558 580 558 580 0.98

12 14 2.3e-06 0.00015 22.5 3.8 1 23 586 608 586 608 0.99

13 14 2.5e-05 0.0017 19.2 0.9 1 23 614 636 614 636 0.99

14 14 1.4e-05 0.00091 20.1 2.2 1 23 642 664 642 664 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7.9e-05	0.0053	17.7	4.0	1	23	162	184	162	184	0.98
2	14	3.5e-05	0.0023	18.8	2.1	1	23	190	212	190	212	0.98
3	14	5e-05	0.0034	18.3	0.3	1	23	318	340	318	340	0.96
4	14	0.00013	0.0089	17.0	2.9	1	23	346	368	346	368	0.96
5	14	4.4e-06	0.0003	21.6	0.6	1	23	386	408	386	408	0.98
6	14	0.071	4.8	8.4	1.1	1	23	417	440	417	440	0.94
7	14	0.00071	0.047	14.7	4.7	1	23	446	468	446	468	0.98
8	14	0.00023	0.016	16.2	0.1	2	23	475	496	474	496	0.96
9	14	8e-08	5.4e-06	27.1	0.5	1	23	502	524	502	524	0.96
10	14	0.00029	0.02	15.9	2.0	1	23	530	552	530	552	0.99
11	14	7.7e-06	0.00052	20.8	2.4	1	23	558	580	558	580	0.98
12	14	2.3e-06	0.00015	22.5	3.8	1	23	586	608	586	608	0.99
13	14	2.5e-05	0.0017	19.2	0.9	1	23	614	636	614	636	0.99
14	14	1.4e-05	0.00091	20.1	2.2	1	23	642	664	642	664	0.96

Sequence Information

Coding Sequence: ATGTCCTCGGACTTGGCAGGAAAATGTCGAACTTGCATGCAGGAGGATAACTATTTCCACCAACTGCATGACATCATAGATGAAGAGCACCGCATTTTGGAAATGTTGGACGGAGTTGTGCCTCAGATTCAGATCAAGAACGAGAGTCCGTTTTCCAGGACGATTTGCCATCAGTGTGTGGATAAATTGTTGGTGGGCTATAAGTTCCAACGTTTGTGTATAGAAACCGACAATCACTTTCGTCGTCTGATGGGTTTGTCCCCTCTGCTGGAGGATGAGTTAAAGCCTGAGACTATTTGGGATCCTTTGgaagaggacactttagatatGAAAGTCGAAATAGAGGATGCTGTTCGTAACAAGATGAGCGATGGTGCAGAGGACACTTTGAAAAGTGATAATGATTTAGAAAGGAAAGAAGTAGATGGAACGGATAACAACGCTACAGATTCAAGTTCCAGTAATACGTCCAACCGTACAGAATTTTCCTGCTCCGATTGTGGTAAACATTTTGGTCGTTTGTCACGTTTGCAAGCTCACAGATGCGTGCATGCCAAGAAACGGGCATTTACTTGTAGCATTTGCAACAAACGTTTTGCCACCGAGAAAACGTACAGAGCCCACAAACTGACACACAAACAAGCAGGAAATGAAATGCAATGTCTGGACAATGTTGAAGTACTTCCGCAAGGTGATGCGGAGAAGGACTCTGCATCACAAGTTGTCACAGACAAAATCCAAGATTCACCACAAATATTTGAGGATTCAATCGGAGAGTTTAATGGAAGTGAAGAGTGGTTGCAGAGCGAAGACAATTCCATAGATTTGGTAAGTGAACATTCGCGGAAGAAAACCGCCGGTAAACCCAAACATGGCAAAAATGTTGATTTCGTCGATACGGGCATAGGAGAAATTGAAAAACCAAACAGCAAAAATCGTCGGAATGGTATCTTTCCTTGCGAGGTATGCGGCAAGATATTCGATAGACCCTTCCGGTTGAAACGTCACAGCTCAGTGCATTCCCTCGATAAGCCTTATGCTTGTGAAATTTGTAAATGTCGTTTCTCCACTGCTAGCTACCTAAGGACACACAAAATGCTACATCAAACCAAAAGCAGTGATGGTTTTCTATCATCCCCAGGCTATACAGAAGGTTTCAAATGTCCGGACTGCCCGCGACGTTTCGAAAAACAGACTTCCCTTTCGGCTCATCGTCAAATACACACACGCGATGCTTTCACCGCCAGTTACTCCTGCTCTGTGTGCCTACGCAACTTTATGTCGGTGAAGACACTAACCGAGCATTTAACTAATAAGCATCCTGACGCGGAGAAACATACATGCGACCAGTGTGACAAGTCCTTTGTCCTGCATGCCCATCTGTTGGAACACTTAAATCGACACAAGGGTAATAAGAATCTGGTTTGTGTCATATGTGAAAAGGAATTTGGTTTTATGAGCACACTCAAGGAGCACATGCGTATTCACAGCGGCGAAAGTCCCTATCTATGTCCAGAATGTGGTAAAACATTTAGGAACGGTAGTAATTTACGCCAACACATGGAACGTCATTCCGGCCTTAAGAAATATCAATGTCCCGAATGTCCCAGTCGCTTTAACTGCCGGTCAGATTTAAAGAAGCACATCGACACTCACAATAGCATACGATCATATGAATGTGATACATGTGGTTCCCGATTTACAAGATCCTATTCGTTGCAGAAACATAAGCGATTGCATTTGGGTAAGAGGCCATATAAGTGCGACCAGTGCAATATGACCTTTGCTCTACTTTATCATTTGCGACGTCACATGCGTACCCATACCGGCGAAAGGCCCTTCAAGTGTAAatactgtgaacgagcgtatgGCGAAAGAGGAGATTTAAACAAACATCTGAGAAGCCATGTGGGAGAAAACACCTACATGTGTGATCAGTGTCCCAAGGCATTTAAATATCAATCGGAATTGCGTCAGCACCATTCAGAACATTACAAAATATCCCAGCAAACGACGCAAGAGTCGGAACATGTTCCGGAAACTACTGACTGA
Protein Sequence: MSSDLAGKCRTCMQEDNYFHQLHDIIDEEHRILEMLDGVVPQIQIKNESPFSRTICHQCVDKLLVGYKFQRLCIETDNHFRRLMGLSPLLEDELKPETIWDPLEEDTLDMKVEIEDAVRNKMSDGAEDTLKSDNDLERKEVDGTDNNATDSSSSNTSNRTEFSCSDCGKHFGRLSRLQAHRCVHAKKRAFTCSICNKRFATEKTYRAHKLTHKQAGNEMQCLDNVEVLPQGDAEKDSASQVVTDKIQDSPQIFEDSIGEFNGSEEWLQSEDNSIDLVSEHSRKKTAGKPKHGKNVDFVDTGIGEIEKPNSKNRRNGIFPCEVCGKIFDRPFRLKRHSSVHSLDKPYACEICKCRFSTASYLRTHKMLHQTKSSDGFLSSPGYTEGFKCPDCPRRFEKQTSLSAHRQIHTRDAFTASYSCSVCLRNFMSVKTLTEHLTNKHPDAEKHTCDQCDKSFVLHAHLLEHLNRHKGNKNLVCVICEKEFGFMSTLKEHMRIHSGESPYLCPECGKTFRNGSNLRQHMERHSGLKKYQCPECPSRFNCRSDLKKHIDTHNSIRSYECDTCGSRFTRSYSLQKHKRLHLGKRPYKCDQCNMTFALLYHLRRHMRTHTGERPFKCKYCERAYGERGDLNKHLRSHVGENTYMCDQCPKAFKYQSELRQHHSEHYKISQQTTQESEHVPETTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -