Hcyr017289.1
Basic Information
- Insect
- Hydrotaea cyrtoneurina
- Gene Symbol
- -
- Assembly
- GCA_958296145.1
- Location
- OY282515.1:69244395-69244928[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-09 4.7e-06 26.7 0.0 5 39 15 48 14 54 0.89 2 2 2.6 4.8e+03 -2.1 0.0 16 22 145 151 140 151 0.81
Sequence Information
- Coding Sequence
- ATGCCCAAATCAAAAAGTAAATCCGGTTTAAATGGACCTATAATGAATATCGCCATAGAGGATATAGAAAAAGGAATGACTATTGAGATGGCTGCTAAAAAGCATTGCATTGCAAAAACAACTTTGTGGCGACactacaaaaaatatcaaatgtcAAGTAAACCACCCAAAACGAAAGCTGCGGCGGAGTCTGTTTTCAATAATGAAGAAGAAGTCTTCCTGGCCGAATACATCAAAACATTGGCACAATTGAAATATGATCTCAGTCGAACAGATGTAATGAAATTCGCCTATCTTATTgcgcataaaaacaaaaaagatatgCCTTTAACGTGGTCCATAAATGGGTCGGCCGATATGGAGTGGCTGAGTGGTTTCCTGAAGAGACATCCGTGTATACCTGTGGTAGATCCGGAAAATATCACCACCAACAACTTGTCCATACAAAAGGCCAAGGATTGTTTATCTCTTCTTTTGTTCAaccaaatttataatttcttgaATACGACGACAGACAATTCTACTAAGAGATAG
- Protein Sequence
- MPKSKSKSGLNGPIMNIAIEDIEKGMTIEMAAKKHCIAKTTLWRHYKKYQMSSKPPKTKAAAESVFNNEEEVFLAEYIKTLAQLKYDLSRTDVMKFAYLIAHKNKKDMPLTWSINGSADMEWLSGFLKRHPCIPVVDPENITTNNLSIQKAKDCLSLLLFNQIYNFLNTTTDNSTKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -