Basic Information

Insect: Hydropsyche tenuis
Gene Symbol: -
Assembly: GCA_009617725.1
Location: VTON01000004.1:6244536-6248515[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.11 8 7.1 0.6 3 23 686 703 684 703 0.89

2 5 3e-06 0.00022 21.5 1.4 1 23 709 731 709 731 0.99

3 5 0.001 0.075 13.5 0.7 2 23 738 759 737 759 0.97

4 5 5.7e-06 0.00042 20.6 0.2 1 23 764 786 764 786 0.98

5 5 0.00025 0.018 15.5 6.0 1 23 792 814 792 814 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.11	8	7.1	0.6	3	23	686	703	684	703	0.89
2	5	3e-06	0.00022	21.5	1.4	1	23	709	731	709	731	0.99
3	5	0.001	0.075	13.5	0.7	2	23	738	759	737	759	0.97
4	5	5.7e-06	0.00042	20.6	0.2	1	23	764	786	764	786	0.98
5	5	0.00025	0.018	15.5	6.0	1	23	792	814	792	814	0.96

Sequence Information

Coding Sequence: ATGACTTTTAAGGAAATAGTATCTGTTATATACGAAGTAGtaatagGGGATCCAGAATTAGAGTTAAAGTTGATAAATTTTCGTCTACGTAACGagtcaatttttgaaaattcaaaagatcCATGGAAgGATTTACAAAAACTCATGGTCAAAGATGGTTTCAGCGCCGATATCCCCTTAGTTGATATAAGAGAGAAATGGAAATCTATCATAAACGATTATCACAAAGCTGTTGAAAGCAATGACACTGAATGGATATACTACAGTGCGTTTCGAATATATGTAGACAccatggaaaatattatagattatacaaaatGGAATGATTATTGGATGATCAAACTCGTTGAAACAAGATGCAAAAATGATTCCATGTTTTTGCATATGAACTGTGATAATAATATTGGTTGGAttgcAATTGAAAGCGATCTTAAAAAACTAGGATTATCTGCAGAATATGATgttatgtgtattaaaaatatgtggttttccttaattgaaatattcaaaaaaaatttcaaaatttatccatgtggtgaaaaatgttttaatccTTGGCCTgtttatgattatatttacatgtattttatgaaatataattctgAGGTCTTAAATAGCATGAAAACAGAACCTCACGAATTATCATTAATTAGCTTCAGTAACACAATATCAGAATCGTCAGATTCAAATGATTCAGATTTCGAACAGGATATTTGCTCCAAATCGAACGATGACACTAAATCTCATTCTGGAGAGTTTAGATgGAACTTTGAATGGACAGAGAAATTTATACGTATTCGTTCAGAAAATGAacatctttttaaaaaaaaatacggagCATGGAAAAAACTACACAATATTCTTATGAAAAATGGATTTCCTTCCATAATCACTTCAGACCAGCTCGTAACAAAATGgtcatttttatacaataaatatcaaaaagctGTTGCAGATAATTCTACTAGttggatttattttgatattatgtctaaatatttagaaaaaccAAGAAAAAAAGCTAAATgGAACGATGAGTGGACAAAAAgtttaatacaaattcgaaTAGAAATGGATAATATGTTTAAAGAGGAACAATCACGAGTGGAGAAGGAATGCTGGATAGctgtaaaaacaaaattaattgccAATGGGATTTTTCTAGACGATGATATTCATAACATCGAAAGAGTTTGGTCATGCTTAGTGAAAACATTCAAAGATAGACACAAACTTATATCAGAAAACAGATCAACCAAAAGATGGAAATTCTATGACGATATGTtcgaatattttgtgaaatgtgctcctaactttttcaatttacctgAAAGTTTGCATATTGTGAATGTTAAGgttgaaaatgataatgaagTCAAAGATGGACATAAACGAGAACCGTTTATAAAAGTTGAATACTTTGACTCTGATTCGTGTCGTGTTTGTTTGGGTAGTTTTGAGACTACTTCACCGCTTTTTGGAACTGAAGAAAACattgctgaaaaaattatgtcatGTACAGAAATGCggatatcacCGACAGATAATTTACCTCAAAAACTTTGCCAAACTTGCATGGAACAACTAAATGTCGTAATGatctttagaaaaaaatgtgaggAATCTGACAAACAGATGAAACAACTTTTGATGTCAAGTGAAAGTCATGAATACTCGTATGATATGCACTTGGTTGATACAAAACTCGAAAAAGATTCTGATGAATCTGTAAATTCtttggatttgaatttttcttatgtAACAGGGGATAACAATGATAATAGAGTTAGTGAGAAGGAAACTGATAAATCGATCAATTCCGATGACATGGATCTTAATTACGCATCCCATTCTGATAACGAAAATTGGATAAACAAGAAGAAATTAAAGaagaataaatcgaaaattcgtaTAGATAAAGCCATGAATTCTGGCAGAACtgaaatcggaaaaaaatcagttcTCAAAATAAAGCGAAAACGAATAGTCAATAAAAGCTGTACAAATAAACCGGGTTCTActattgatagaaaaaagtatgtttactataaaatgtgtgaaatttgCGGACGAGTAACATCGAAACTAAAAATTCACATGTTGAGTCATACTActgaaaaaatgttcaaatgtCCGACGTGTTCGAGCACATTTAGATATCTAGGAAATCTTAGAAGTCATATGCGAGTTCATGAAACTACTCCGCATAAAGTTTGTCAAATTTGTGGAagagaattttcgaaaacggttGTTTATAAAAGACATTTGCTTAAGCATGATAGTCAAAGGTATTCGTGCAATATTTGTAATAGATCTTTCAACACACCTGATGTCCTTGCCGTTCACAAGAGGATACACACTGGTGAAAAACCTCATGCGTGTGATATTTgtggaaaacatttttatactaaaGCGTGTGTGAGAAGACACCAAAAAGTACATAGAAATTTggaaaaacaaatgaaaatgcAAGAATAA
Protein Sequence: MTFKEIVSVIYEVVIGDPELELKLINFRLRNESIFENSKDPWKDLQKLMVKDGFSADIPLVDIREKWKSIINDYHKAVESNDTEWIYYSAFRIYVDTMENIIDYTKWNDYWMIKLVETRCKNDSMFLHMNCDNNIGWIAIESDLKKLGLSAEYDVMCIKNMWFSLIEIFKKNFKIYPCGEKCFNPWPVYDYIYMYFMKYNSEVLNSMKTEPHELSLISFSNTISESSDSNDSDFEQDICSKSNDDTKSHSGEFRWNFEWTEKFIRIRSENEHLFKKKYGAWKKLHNILMKNGFPSIITSDQLVTKWSFLYNKYQKAVADNSTSWIYFDIMSKYLEKPRKKAKWNDEWTKSLIQIRIEMDNMFKEEQSRVEKECWIAVKTKLIANGIFLDDDIHNIERVWSCLVKTFKDRHKLISENRSTKRWKFYDDMFEYFVKCAPNFFNLPESLHIVNVKVENDNEVKDGHKREPFIKVEYFDSDSCRVCLGSFETTSPLFGTEENIAEKIMSCTEMRISPTDNLPQKLCQTCMEQLNVVMIFRKKCEESDKQMKQLLMSSESHEYSYDMHLVDTKLEKDSDESVNSLDLNFSYVTGDNNDNRVSEKETDKSINSDDMDLNYASHSDNENWINKKKLKKNKSKIRIDKAMNSGRTEIGKKSVLKIKRKRIVNKSCTNKPGSTIDRKKYVYYKMCEICGRVTSKLKIHMLSHTTEKMFKCPTCSSTFRYLGNLRSHMRVHETTPHKVCQICGREFSKTVVYKRHLLKHDSQRYSCNICNRSFNTPDVLAVHKRIHTGEKPHACDICGKHFYTKACVRRHQKVHRNLEKQMKMQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -