Basic Information

Insect: Hydropsyche tenuis
Gene Symbol: -
Assembly: GCA_009617725.1
Location: VTON01000216.1:38578-41900[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00069 0.051 14.0 1.3 1 23 194 217 194 217 0.95

2 9 1.1 81 4.0 0.9 5 23 226 244 224 244 0.93

3 9 8.9e-07 6.5e-05 23.1 0.9 2 23 251 272 251 272 0.97

4 9 3.8e-05 0.0028 18.0 0.5 1 23 279 301 279 301 0.96

5 9 0.0011 0.079 13.4 0.5 2 23 311 333 310 333 0.95

6 9 1.7e-05 0.0013 19.1 0.9 1 23 339 361 339 361 0.95

7 9 0.00035 0.026 15.0 2.4 1 23 394 416 394 416 0.98

8 9 8.3e-06 0.00061 20.1 4.1 1 23 422 444 422 444 0.97

9 9 0.019 1.4 9.5 0.7 5 22 454 471 453 471 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00069	0.051	14.0	1.3	1	23	194	217	194	217	0.95
2	9	1.1	81	4.0	0.9	5	23	226	244	224	244	0.93
3	9	8.9e-07	6.5e-05	23.1	0.9	2	23	251	272	251	272	0.97
4	9	3.8e-05	0.0028	18.0	0.5	1	23	279	301	279	301	0.96
5	9	0.0011	0.079	13.4	0.5	2	23	311	333	310	333	0.95
6	9	1.7e-05	0.0013	19.1	0.9	1	23	339	361	339	361	0.95
7	9	0.00035	0.026	15.0	2.4	1	23	394	416	394	416	0.98
8	9	8.3e-06	0.00061	20.1	4.1	1	23	422	444	422	444	0.97
9	9	0.019	1.4	9.5	0.7	5	22	454	471	453	471	0.92

Sequence Information

Coding Sequence: ATGTCTATCAGTCGAGGAGACTTGTGTCGTTTGTGTGCTACACATTCTGATTTAAATGAACATTCTATCTACTCtactttaaatttatcacaaattatactaaaatacTTAACCATTAAGATAAAAAATGATGACAAACTTTCAACCAGAATTTGTCATAAATGTGaagaaaaaatcacaaatttccACACGTTCGCTACTCAATGTGAAAGAATTCAAGCGTTGTgcgaatcgtataaaaaagataatattatcGACGTAATAAATCGAGAACTTGTaaaaatcgaagaaaataTCGCGATTCAAATGAAAGAAGAATTCGATGATTATaatgatGACCAGAGTATGGAAGATTGTACTGAGTTTATAGAACCAATCGAAATAAAGAAAAGTGAAAACTCgataaaagaaagaaaaaaaatagtgcatgaagacaaaaaaatgatccctcccaaaaatgttattaatggTGTCGAAGCTTTAGTAAAAGATGAAATCAAAGATTGCATTGAAAGCgaagataaaaaatgtaaacttGATAACAAAagagaaaagaaaaatgatttcaatagTATAAGaTATAAATGTCACATATGCGAAGTCGAATGCAAAAATTGGGCAGCTTTGAATTTGCACACTTCAAATGTGCATGGAACCTACCCGcaaataaaatgtgtttgcgaaaaaatattgtttcaaacaGAAGCTTTTGAAAGGCACAAGAGGAGGCACAATCTCGAAAAATGTCGTGTCTGCGATTATTGTAAGAAGACGTTTAGTTCGAAGAGtgaaatcgaaaaacataTTCTCACTCACTTACCAAAGAATGAATCGTACGTATGTGGTAAATGTTCTAAAAGTTTTTCTAGTCcccgttttttaaaaatacatgaagaTATTCACAGGCCTCAAGAAGAACGTTACATATGGCCTTGCAAAATATGTGATAATAAATTTGCATCGAAAACTGTGCtcgaaaatcacaaaaaaagaCTACATGAAAAGCTACGTCCTTACGTGTGTGATTTATGCGGTTATTCTTTTAATACGATTgctcatttgaaaaaacatagTGACATTCATTTAACTGAAAAAACCTTTGTTTGTGAAAAGTATAATGAAAgGTCTAAATCAAAAGCATCCTATCGTCAACATAGAGATTCTCATGCTGATACGGCTTATCGATGTCCTCATTGTCCTATGTTGTTCAATAGTCGTACGACTTTAAGATATCATCTTTACATTCACAATGAATATGCAAATCACCCTTGTTCAGTGTGCAAAAAAAcgttcagaaaaaaaacagatttaatgagCCACATGAAACAACACACTGATGAACGTCCATATTCATATTCGTGGTGTCCACAGACATTTTGTAGTACCTCAAATTTCAGAATTCACAAACGACGGATGTACCCTACCGAATCTGAATTAGCCGATAAACACAATCCTTACCTACGCCCCAAAGACGAGAAGAAAGGCACGTCGAAGAAAGTCATTACCCCGATAATAAAGGCTCGTCCAGTTCCTTTGAAACCGTCTAACTCAATTGAATTGAGTAAAGTACGTAATATTGGTAGAAAAGAATCGGGGAAACGCCGAATTTGA
Protein Sequence: MSISRGDLCRLCATHSDLNEHSIYSTLNLSQIILKYLTIKIKNDDKLSTRICHKCEEKITNFHTFATQCERIQALCESYKKDNIIDVINRELVKIEENIAIQMKEEFDDYNDDQSMEDCTEFIEPIEIKKSENSIKERKKIVHEDKKMIPPKNVINGVEALVKDEIKDCIESEDKKCKLDNKREKKNDFNSIRYKCHICEVECKNWAALNLHTSNVHGTYPQIKCVCEKILFQTEAFERHKRRHNLEKCRVCDYCKKTFSSKSEIEKHILTHLPKNESYVCGKCSKSFSSPRFLKIHEDIHRPQEERYIWPCKICDNKFASKTVLENHKKRLHEKLRPYVCDLCGYSFNTIAHLKKHSDIHLTEKTFVCEKYNERSKSKASYRQHRDSHADTAYRCPHCPMLFNSRTTLRYHLYIHNEYANHPCSVCKKTFRKKTDLMSHMKQHTDERPYSYSWCPQTFCSTSNFRIHKRRMYPTESELADKHNPYLRPKDEKKGTSKKVITPIIKARPVPLKPSNSIELSKVRNIGRKESGKRRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -