Hten006787.1
Basic Information
- Insect
- Hydropsyche tenuis
- Gene Symbol
- -
- Assembly
- GCA_009617725.1
- Location
- VTON01000216.1:42508-45593[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.1 1.5e+02 3.1 0.1 5 17 177 189 176 190 0.90 2 11 0.0051 0.38 11.3 2.4 1 23 193 216 193 216 0.92 3 11 2.7 2e+02 2.7 1.3 5 23 225 243 223 243 0.93 4 11 0.00026 0.019 15.4 0.5 1 23 249 271 249 271 0.98 5 11 0.0065 0.48 11.0 1.2 1 23 278 300 278 300 0.96 6 11 6.6e-05 0.0048 17.3 1.0 2 23 310 332 309 332 0.95 7 11 0.00012 0.0089 16.4 0.2 1 23 338 360 338 360 0.98 8 11 8.1e-05 0.006 17.0 4.6 1 20 366 385 366 388 0.94 9 11 0.00092 0.068 13.7 1.7 1 23 393 415 393 415 0.98 10 11 9.2e-06 0.00068 19.9 3.7 1 23 421 443 421 443 0.97 11 11 8.2e-06 0.0006 20.1 1.9 1 23 449 472 449 472 0.97
Sequence Information
- Coding Sequence
- ATGTCTATTAGTTGGGGTGATTTGTGTCGTTTGTGCGCTGCACATTCCGATTTAAATGAACAATCAATTAATTctacttcaaatttatcacaaaTCATACTGAAGTACTTATCCATAACgataaaaaatgatGACGATCTATCAACCAGAATTTGTCATAAATGTGAAGAAAAGGTCACAGATTTCCACATATTCGCTACTGAATGTGGAAGGATTCAGTCGATGTTCGAAGCttacaaaaaagataatattatcAACGGGATAAATCACCAACTTATAAAAACCGAAGATAATGTCGGGAATCAAATCAAAGAAGAAATCGACGATTATaatgaCGACCATAATATGGAAGAATGCCCTGAGTTTACAGAACCAATCGAAACAAAGAAAAGTAAAAACTCGTTGATAAAAGGCAGAAGAAAAAGTTTGCGTAAAAAGAGACAAATAATCCCTCCTAAAAGTATAATTTACGGTGTTAAAGCTTTACTAAAAGATGaaaTCAAAGATTGCATTAAAAACgaagataaaaaatgtaaacgtgTTTACAAAAAGAAAGATgaactaaatattattaaATATAAATGTCACATATGCGAAGTCGAATGCAAAAATTGGACAACTTTGAGTTTGCACACTTCAGATGTGCACGGAGCTAATCCgcaaataaaatgcatttgtttaaaaatattgtctaATGTGCGATCAGTTCAAAGACACAAGAGGAAACACGATCCCAGTAAATGTTTTACCTGTGATTATTGTCAGAATACGTTTGGTTCGAAGAAAGAAATTGAAGTACATATTCTCACTCACTTACCAAAGACTAAATCGTACGTATGTGGTAAATGTTCTAAAAGTTTTTCTTGTCCCCGTGTATTAAAAGTACacgaaaatattcacaaaccTCGAGAAGAACGTTACATATGGAATTgcgaaatatgtaatatgaaATTTCCGTCGAAAACATCGCTCAAAACTCACAAAAGaaatatacatgaaaaaatccgTCCTTACATGTGTGATTTATGCGGTTATTCTTCTTCTTTGAGATCTATGTTGGAAGATCATATAATGCGTCATAGTActgaaaagaattttaattgcgACAAGTGTGATaaaagGTTCAAAACGAAAGATTCGCTTCGTATTCATAGAGATTGCCATGCTGATACGGCTTATCAATGTCCACATTGTCCAATGTTGCTCAATACTCGTAAAACTTTGAAGAATCATCTTTACATTCACGATGAATCTGCAAATCACCCTTGTTCCGTGTGCAAAAaggcattcaaaaaaaaaaaagatttgatGACCCACATGAAACAACACACTGGCGAACGTCCATATTCGTGTCAATGGTGTTCTCGGACGTTTTCTAATGCCTCAAATTTCAGAATTCACAAACAACGGATGCACCCTACTGAACTTCAACTAGCCGATAAAACCAATCCTTACCTACGCCCCAaagACAAGATGAATGGTATGCCGAAGAAAATCATTCACATGATAATTAAGGCTCAACCAGTTCCTTTGAAATCATCCAACGCAATTGAATTGAGTGATCtacataatattgataaaaaagaaTCGGAAAAACGCCTAATTTGA
- Protein Sequence
- MSISWGDLCRLCAAHSDLNEQSINSTSNLSQIILKYLSITIKNDDDLSTRICHKCEEKVTDFHIFATECGRIQSMFEAYKKDNIINGINHQLIKTEDNVGNQIKEEIDDYNDDHNMEECPEFTEPIETKKSKNSLIKGRRKSLRKKRQIIPPKSIIYGVKALLKDEIKDCIKNEDKKCKRVYKKKDELNIIKYKCHICEVECKNWTTLSLHTSDVHGANPQIKCICLKILSNVRSVQRHKRKHDPSKCFTCDYCQNTFGSKKEIEVHILTHLPKTKSYVCGKCSKSFSCPRVLKVHENIHKPREERYIWNCEICNMKFPSKTSLKTHKRNIHEKIRPYMCDLCGYSSSLRSMLEDHIMRHSTEKNFNCDKCDKRFKTKDSLRIHRDCHADTAYQCPHCPMLLNTRKTLKNHLYIHDESANHPCSVCKKAFKKKKDLMTHMKQHTGERPYSCQWCSRTFSNASNFRIHKQRMHPTELQLADKTNPYLRPKDKMNGMPKKIIHMIIKAQPVPLKSSNAIELSDLHNIDKKESEKRLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00815996;
- 90% Identity
- -
- 80% Identity
- -