Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00021 0.015 15.7 0.3 1 19 149 167 149 168 0.97

2 6 1.8e-05 0.0014 19.0 0.3 2 23 187 208 186 208 0.97

3 6 6.1e-08 4.5e-06 26.8 1.6 1 23 212 234 212 234 0.96

4 6 1.4e-06 0.0001 22.5 0.2 1 23 239 261 239 261 0.97

5 6 0.00029 0.021 15.3 4.2 1 23 267 289 267 289 0.95

6 6 7e-05 0.0051 17.2 2.6 1 23 295 318 295 318 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00021	0.015	15.7	0.3	1	19	149	167	149	168	0.97
2	6	1.8e-05	0.0014	19.0	0.3	2	23	187	208	186	208	0.97
3	6	6.1e-08	4.5e-06	26.8	1.6	1	23	212	234	212	234	0.96
4	6	1.4e-06	0.0001	22.5	0.2	1	23	239	261	239	261	0.97
5	6	0.00029	0.021	15.3	4.2	1	23	267	289	267	289	0.95
6	6	7e-05	0.0051	17.2	2.6	1	23	295	318	295	318	0.97

Coding Sequence: ATGGCTTATCAGACTCAATATACTCTGAGTAATCAGTTAGGatccaaaaattttaagaacGAAAAAGATGATACAAACAATACAGCACTTGGAACGAATGTAACAGAAATGAAAGAAGATGATTATGAAGACGACAATTCCAGTTTAGAAGATGAATCTGATGTGACCGAAATGGAAGTGACATTAGATCCGATGATGTTTTTGGATTCCCATACTGATGATAGCCAAACAAACGAtggtaaaaattatgataacaCAAGTATACGAAATAATGATATTGACTGTGCTActttaactaaaatagaagacgGTTCGCAATCTTTATCTATTGAATTAGTACGATTTGCAGGCAAAcctcaatttgaaaaaacgcTCAAAGTCATGCCGGATTTAAAACCGATCAAACcgacaaaaaagtttttaccAACTGATGGTGTTAGACCATATGTTTGTACTTATTGTCCGAGAAGTTTCTTTTCTAGTATCGCTTTACAAAATCATTCATGGTtgcatttaaataaacaagaaaCCGAATTATCAATTTGTgggacgaaaataaaatgtcctATATGTCTGAAAGAAATATCGAGAAAgactaatttgaaaatacatatggAATCTCATAAGCAGAAATATAATTGTGATATTTGCGGTAGAGTgtTCAAAACACAATCTAATTTGTTTCGACACAAAGAATATCATGGAGGAGAAGTTTATACTTGCAATGTATGTGGACGTGTTTATCCAACTAATAGTACATTACGAGCTCATAGTGTTACTCATAGCGATGCTAGACCTCATAATTGTCCATTATGTAAAAAGACATTTAAACGTAATCAGGATCTGAAGtttcatATAAACCAACATACAGGAGAGCGCCCTTATCGTTGTCCATATTGTCCGAAAGCTTTTGCAAGTTCTGGTAATTGTTTTTCACATCGCAAAAGAATGCATCCTGCAGAAGTAGAACGAGACAGAGAGAAATCATCAACTTAA
Protein Sequence: MAYQTQYTLSNQLGSKNFKNEKDDTNNTALGTNVTEMKEDDYEDDNSSLEDESDVTEMEVTLDPMMFLDSHTDDSQTNDGKNYDNTSIRNNDIDCATLTKIEDGSQSLSIELVRFAGKPQFEKTLKVMPDLKPIKPTKKFLPTDGVRPYVCTYCPRSFFSSIALQNHSWLHLNKQETELSICGTKIKCPICLKEISRKTNLKIHMESHKQKYNCDICGRVFKTQSNLFRHKEYHGGEVYTCNVCGRVYPTNSTLRAHSVTHSDARPHNCPLCKKTFKRNQDLKFHINQHTGERPYRCPYCPKAFASSGNCFSHRKRMHPAEVERDREKSST

Sequence clustering based on sequence similarity using MMseqs2