Basic Information

Insect: Hydropsyche tenuis
Gene Symbol: -
Assembly: GCA_009617725.1
Location: VTON01000074.1:429608-432906[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0033 0.24 11.9 0.4 3 23 200 222 198 222 0.95

2 11 0.026 1.9 9.1 1.0 1 19 228 248 228 253 0.95

3 11 0.0034 0.25 11.9 0.2 2 23 313 336 312 336 0.96

4 11 5.3e-05 0.0039 17.6 1.5 1 23 342 366 342 366 0.98

5 11 6.2e-06 0.00046 20.5 1.9 1 23 374 398 374 398 0.95

6 11 0.25 18 6.0 0.0 3 23 407 429 405 429 0.87

7 11 0.21 16 6.2 3.7 1 23 436 459 436 459 0.93

8 11 2.4e-05 0.0017 18.7 0.9 3 23 468 490 467 490 0.94

9 11 4.7e-05 0.0035 17.7 1.4 1 23 496 520 496 520 0.97

10 11 0.00034 0.025 15.0 1.1 1 23 528 550 528 550 0.98

11 11 0.02 1.5 9.5 5.8 1 23 556 581 556 581 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0033	0.24	11.9	0.4	3	23	200	222	198	222	0.95
2	11	0.026	1.9	9.1	1.0	1	19	228	248	228	253	0.95
3	11	0.0034	0.25	11.9	0.2	2	23	313	336	312	336	0.96
4	11	5.3e-05	0.0039	17.6	1.5	1	23	342	366	342	366	0.98
5	11	6.2e-06	0.00046	20.5	1.9	1	23	374	398	374	398	0.95
6	11	0.25	18	6.0	0.0	3	23	407	429	405	429	0.87
7	11	0.21	16	6.2	3.7	1	23	436	459	436	459	0.93
8	11	2.4e-05	0.0017	18.7	0.9	3	23	468	490	467	490	0.94
9	11	4.7e-05	0.0035	17.7	1.4	1	23	496	520	496	520	0.97
10	11	0.00034	0.025	15.0	1.1	1	23	528	550	528	550	0.98
11	11	0.02	1.5	9.5	5.8	1	23	556	581	556	581	0.96

Sequence Information

Coding Sequence: ATGCAGAGTATTAACAGTACTAAGGGAACCTTCCCTGTCTCGTCGACTGATAGTAGAAAACCTAATATATTACGGCGTCGTCCAGCTTTGCGCTCTCCGAACTCTGTTGAACAGAACATCAACGTTTCGTCGAAACACTCGGAGGAAATTAAGTTAACTGCCGTCGATATTCCAAAGTCTACGAACAAAGCTAACAATCGACGTTGCAACACTAAAGAAACGAGAAGTAATGCTAAAACTCAGAATTCTTCGCAAAAAATCGTCCTCGATTCGTATTTCTGCGACAAGTATCGTAAGGCGCACGAAAGTTCCAATTGCAAAATCAGCTTTTCTATACCTTTGGCTAATCAGGATTTGCAAACAATCAACGACAAAATACTGAATTCGAATACTGTCATAAACGGAACTACCAATGAGAATGTTGAAAATGCAGAAAATGTCGAATTACCTATTGAGGTTGTTTTCTCTGgagaaaataatacaattactTTGAACGGATTGAATCATGAACAAGTTTTGGCTGGGTTAGAATCTGGTCAATTTGGCGTTGGTCAAGTTTTGGTAGGCGAAGGTGCAGATCAGGTTCAATATTGGTTTTGTCCCATTatcaattgtaataaattatataatgaaaaatctgatCTACATGTTCACATTCTTACTCATTTCGACCTTAAATCTTTTaagtgcAATATTGATGACTGTTCACAAGAGTTTATAAATGAAGACTTGTTAAAACAACACTGTGATAATGTTCATGTCAAACATGACGATAAaaatagtgataaaatatCTCCTGTAGTTTCTTACATTATTTCCATTAAAGGCAATGATGATGGAGAGCCTCGCTACATAGTAGATGCTGCACTAGCTTCAGTCGGAATAACTGAAGATCAATTAATTTCTGTACAACATCCAGATGGCAGTCGACATTGGGTTTGTCCTCAAATCGATTGCGATTTGCAATTCAAAGCTCTTCATTTGCTCAAAAGTCACATTTTGATGCATTACGATCTGCGACCGTTCAAGtGTGATTACGAAGGCTGCGGTTGGGGCTTCCGctatttgcataaattaaaaaagcattTAAACGTACATAAAGTACACAATAAAACTACATTTGCTTGCACACACACTGGATGTTCAAAAGCTTTTagcacaaaatataatttatctgtTCATATGAAAGTACACGAAAAGAAACCAGAAGACATACCATGTCCGGCTCGTGCTTGTACATTATTATTCACTTCACGAGCTGATCTAGAAACTCATCTCGAAGAACATACATTGGACGATGCCGTTCATTgttgcGCATCTTGCGGAAAGCGATTCTGGCGGAGTACAGCGTTAGCCTCGCACCATGCTCGAGCTCATGCTAATTCACCCGTTAAACCAGTTTGTCCTTGGCCTAGGTGTGGAAGGAAATTTACTCAGCCATGTCAATTGCGTTATCACATACGATCTCATACTGGTGACAAACCTTATCGTTGTACATATCCATCATGCGACAAGGCATTCTCTTATTCTAGTAAGTTATCTAGACATGCTCGTCAGCATTCAAAAGTAAAAGAAGGTAGATACATCTGTAGAGAGTGTTGTCGTGCTTTTGTGCGCCcagataatttaaaagaacATTTGCTTCGTCATATGGCGCAAAACAGTCACCAATGTGACTATCCTGgttGTGATCAAAAGTTTTGTACTGAGAGATCGCTTCATGCACATAAGAAAAAAGAACATGgtactaatattaaaaataagactgaacaaattaaaatcattgacAATATCTCTGAATTAAGAAACTCTCCAACTGACTTTATTTCTATGGagagtTGTGATGACGATTTGCTGTATCTCCAAAGTGCTAGAACACACGTGCCTTGGTCTCCGGATGTTACTTGTGATTTACAATCGCCTTTGTTGCCTCAAGATTCTGGATTATTATTACAACAAAGAAGTCGTGACGAGAAAAGAGGAAATCCTTTAGTTTGTGGCGGATTGAGTTTAGATAGCGACGGTTCAGCAGCTAATGCTGGTTTGATACTGGAAACGAGCGAATCGGCTATATCGAGCTTACCAGAACTGGAGACGGATCTCTTAGAATCTACTGGAGACCATATGAACAGCTTATTGTTGcaggAGGAATTAACAGATGGAATGTTGTATACCACAGAAGAAGAAGCTGCATTACAGGTGCTTTTACTGAACGAAGATCCAGCACCGTGA
Protein Sequence: MQSINSTKGTFPVSSTDSRKPNILRRRPALRSPNSVEQNINVSSKHSEEIKLTAVDIPKSTNKANNRRCNTKETRSNAKTQNSSQKIVLDSYFCDKYRKAHESSNCKISFSIPLANQDLQTINDKILNSNTVINGTTNENVENAENVELPIEVVFSGENNTITLNGLNHEQVLAGLESGQFGVGQVLVGEGADQVQYWFCPIINCNKLYNEKSDLHVHILTHFDLKSFKCNIDDCSQEFINEDLLKQHCDNVHVKHDDKNSDKISPVVSYIISIKGNDDGEPRYIVDAALASVGITEDQLISVQHPDGSRHWVCPQIDCDLQFKALHLLKSHILMHYDLRPFKCDYEGCGWGFRYLHKLKKHLNVHKVHNKTTFACTHTGCSKAFSTKYNLSVHMKVHEKKPEDIPCPARACTLLFTSRADLETHLEEHTLDDAVHCCASCGKRFWRSTALASHHARAHANSPVKPVCPWPRCGRKFTQPCQLRYHIRSHTGDKPYRCTYPSCDKAFSYSSKLSRHARQHSKVKEGRYICRECCRAFVRPDNLKEHLLRHMAQNSHQCDYPGCDQKFCTERSLHAHKKKEHGTNIKNKTEQIKIIDNISELRNSPTDFISMESCDDDLLYLQSARTHVPWSPDVTCDLQSPLLPQDSGLLLQQRSRDEKRGNPLVCGGLSLDSDGSAANAGLILETSESAISSLPELETDLLESTGDHMNSLLLQEELTDGMLYTTEEEAALQVLLLNEDPAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00815362;
90% Identity: iTF_00815362;
80% Identity: -