Basic Information

Insect: Hydropsyche tenuis
Gene Symbol: -
Assembly: GCA_009617725.1
Location: VTON01000135.1:310541-312586[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5e-06 0.00037 20.8 0.5 1 23 233 255 233 255 0.96

2 15 0.007 0.51 10.9 2.8 1 23 261 283 261 283 0.97

3 15 1.7e-05 0.0013 19.1 1.5 1 23 288 310 288 310 0.98

4 15 0.18 13 6.4 0.5 1 23 315 338 315 338 0.97

5 15 8.3e-05 0.0061 16.9 2.8 1 23 360 382 360 382 0.97

6 15 0.0036 0.27 11.8 0.7 1 23 388 410 388 410 0.97

7 15 8.9e-05 0.0065 16.8 0.6 1 23 416 438 416 438 0.94

8 15 0.013 0.96 10.0 9.6 1 23 443 466 443 466 0.97

9 15 0.68 50 4.6 1.9 1 23 473 495 473 495 0.92

10 15 0.0012 0.085 13.3 0.7 2 23 499 520 498 520 0.96

11 15 0.095 7 7.3 0.3 1 23 530 553 530 553 0.94

12 15 6.1e-05 0.0045 17.4 0.4 1 23 559 581 559 581 0.95

13 15 0.014 1 10.0 0.1 2 23 588 609 588 609 0.96

14 15 0.018 1.3 9.6 0.5 1 23 615 638 615 638 0.95

15 15 0.0047 0.35 11.4 3.7 3 23 645 665 644 665 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5e-06	0.00037	20.8	0.5	1	23	233	255	233	255	0.96
2	15	0.007	0.51	10.9	2.8	1	23	261	283	261	283	0.97
3	15	1.7e-05	0.0013	19.1	1.5	1	23	288	310	288	310	0.98
4	15	0.18	13	6.4	0.5	1	23	315	338	315	338	0.97
5	15	8.3e-05	0.0061	16.9	2.8	1	23	360	382	360	382	0.97
6	15	0.0036	0.27	11.8	0.7	1	23	388	410	388	410	0.97
7	15	8.9e-05	0.0065	16.8	0.6	1	23	416	438	416	438	0.94
8	15	0.013	0.96	10.0	9.6	1	23	443	466	443	466	0.97
9	15	0.68	50	4.6	1.9	1	23	473	495	473	495	0.92
10	15	0.0012	0.085	13.3	0.7	2	23	499	520	498	520	0.96
11	15	0.095	7	7.3	0.3	1	23	530	553	530	553	0.94
12	15	6.1e-05	0.0045	17.4	0.4	1	23	559	581	559	581	0.95
13	15	0.014	1	10.0	0.1	2	23	588	609	588	609	0.96
14	15	0.018	1.3	9.6	0.5	1	23	615	638	615	638	0.95
15	15	0.0047	0.35	11.4	3.7	3	23	645	665	644	665	0.97

Sequence Information

Coding Sequence: atgCTCGAAACTAGCGGCCTGCCCGACAATATGTGCTCGTTGTGTGCCGACAAAATCAAAACGGCGTACGAATTGATTATACAGTGTGAAAAATCCGAAgtcttgttaaaaaaatctgtggACTGCCTGTATCGAAGGTTCAAGAATATATTGTTAGAGTCTAacattttagaaaatgaaaCGATCCTCGTCGTCGTTCCCAAATCGGAAGTGATGGACGACGACGATGATAGAGGGAGTGATTCTAAAATTTCACAGGATAAACCTTTGGACGTTGGTGACGATCTATTTGTATTTACCCTTGGGAAAGATGGACAGTTGCAAGACTTTgattctttgaaatttgatttagaaaTGTTGAAGGTTAAAGAGGAAGACAACGATAATAGAAATTCTCTGACTGTCAAGGAAGAACCGGAACCGAGTTTCGACCAGTCGGAATTGGACTACGAGTGTTCGATGCTCGATGTGAAACTTGAAACTCAAGAATCTGAAAATGAATCTTCCCACGATTCTGAATCTTCGAATTTGGAAGATCTAGATGATAGTTCTATATTTGTAATAGACGAATCCCCGTCTGATTTGAATAACGTTGAATTGATTTCGTCCGATATTTATTACGAATCGTTGGATAATTTAAACAGTTCCAGCgatgcaaaattatttagtggCGCTtctgtgaaaaatgttttcaaatttgattgtaCAATGTGCAATGAAAGCTTCGTCACTAAAGGTGAACTCAAGTCTCACATGACTGAACATCCGAAGGGAACCAAGCACGTTTGTAGAATATGTTCAAAatcatatagaaaaattagtattttgaaaagaCACTATATTACTCATAGAGAACAGAAATATTCATGTTCACATTGTTCGCAAATATTTCCAAACGAATCGTTGTTAAATACTCATATGTCGTCCCATCGAGGTGCCAAACATAAATGTATGGTGTGCGATACTGCCCTACTTACAGAATATGCTCTTTTTGAACATTTGAAAACAGAGCATTCTATCGAAGCAGAAGCTGTAACGGCTCAAGCCGACGTTTCGAACAAGAGCAACGATGAAAAATTCGACTGTACAATGTGCCACGAATCCTTCGATAACCTAGAGAGTTTGAAAGAACATAAGAAAACTCATCCCGAAGGATCACGACACGTTTGCAGAATATGTGACAAATCTTATTTGGAAGTCAGTACTTTGAAGCGTCACTTGATAGTTCACACAGGGAAAAAAACCTATCTTTGTCCCGTTTGTGGTAAATCGTTTTTCTATAGAAATGTCCTGAAGTCCCATATGGTTTATCATAGTGAAAAGAAACACAGATGTCATCTGTGCGATAAAAGATTTCACATGCGACACATGCTACGCGAACACGTACGTATGTCGCATTCAAACAATAGGTACAATTTCATGTGCGATACTTGCGGCAAACTTTGCAGTTCTGGACGAAGATTCGCAATACACAAAGAGAGTCATAACATTATTAGTTGTCCCACTTGCGGAAAACTATACAGAAACGTTCGATATTATAAGCAACACCTCAAACTACACAACGGCATCACCACACCGAAAAAGTTATTCATATGTGATTATTGTGGTGAAAAAAGAACTTTGAAAACACTCATAGAGCTACACATTCTTAGTAAACACTTAAACGAAAGGCGTTACCAATGCAAACTGTGTGATAAAGCCTTTTTCAGCAAAGGCAGCCTGAGTGAGCACGAAGTCGTCCACAGCAGGAAAAAGTCAGAGACTTGTGGCGTCTGCGGCCGTATTCTCGTCAATAGGAAGGCTTTAATATTGCACAATAGACTGCACACCGGCGAAAGACCGTACCCTTGCAATATGTGCGGCGAGAAGTTTCTGTCGAGCAGCCGAAGACTTGCACACATCAAAAGTAAACACGGCGAACGGACTGAACATTGCACCATATGCCCGTCAAAGTTCCATTTGCGCAGTGATCTCAATAAACACATGCTTGTGCATTCTAAAGAGccgaaaaaagttaaaaaggAATTTGTGTTCAGTATGTCGTAA
Protein Sequence: MLETSGLPDNMCSLCADKIKTAYELIIQCEKSEVLLKKSVDCLYRRFKNILLESNILENETILVVVPKSEVMDDDDDRGSDSKISQDKPLDVGDDLFVFTLGKDGQLQDFDSLKFDLEMLKVKEEDNDNRNSLTVKEEPEPSFDQSELDYECSMLDVKLETQESENESSHDSESSNLEDLDDSSIFVIDESPSDLNNVELISSDIYYESLDNLNSSSDAKLFSGASVKNVFKFDCTMCNESFVTKGELKSHMTEHPKGTKHVCRICSKSYRKISILKRHYITHREQKYSCSHCSQIFPNESLLNTHMSSHRGAKHKCMVCDTALLTEYALFEHLKTEHSIEAEAVTAQADVSNKSNDEKFDCTMCHESFDNLESLKEHKKTHPEGSRHVCRICDKSYLEVSTLKRHLIVHTGKKTYLCPVCGKSFFYRNVLKSHMVYHSEKKHRCHLCDKRFHMRHMLREHVRMSHSNNRYNFMCDTCGKLCSSGRRFAIHKESHNIISCPTCGKLYRNVRYYKQHLKLHNGITTPKKLFICDYCGEKRTLKTLIELHILSKHLNERRYQCKLCDKAFFSKGSLSEHEVVHSRKKSETCGVCGRILVNRKALILHNRLHTGERPYPCNMCGEKFLSSSRRLAHIKSKHGERTEHCTICPSKFHLRSDLNKHMLVHSKEPKKVKKEFVFSMS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00815313;
90% Identity: iTF_00815313;
80% Identity: -