Hten007565.1
Basic Information
- Insect
- Hydropsyche tenuis
- Gene Symbol
- -
- Assembly
- GCA_009617725.1
- Location
- VTON01000036.1:2213543-2216123[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.71 52 4.6 0.5 1 23 142 164 142 164 0.96 2 11 3.2e-06 0.00024 21.4 3.9 1 23 171 193 171 193 0.99 3 11 9.4e-05 0.0069 16.8 0.6 1 23 197 220 197 220 0.98 4 11 2.8e-06 0.0002 21.6 0.7 2 23 228 249 227 249 0.98 5 11 0.056 4.1 8.0 6.9 1 23 255 277 255 277 0.96 6 11 2.8e-06 0.00021 21.6 1.5 1 23 283 305 283 305 0.97 7 11 0.0002 0.015 15.7 1.6 1 22 321 342 321 346 0.93 8 11 0.00043 0.032 14.7 1.8 1 23 354 377 354 377 0.94 9 11 0.00011 0.0079 16.6 0.1 2 23 384 406 383 406 0.96 10 11 0.00014 0.011 16.2 0.7 1 23 415 437 415 437 0.97 11 11 0.0054 0.4 11.2 1.1 1 23 443 466 443 466 0.96
Sequence Information
- Coding Sequence
- atgagtTCGATTTGCAGGGGTTGTTTGTGTGTTTCTGCTGACAATTTTGTTTCGCCCGTGCCTCCAAATTTGGCtgaacattttgaatttctcaTTGgacaaCTAGCAAATGAAATTCTGgaaattgagaaaaaagaTCTTAAGCCATCCACATTGTCCAGATCTCCTATAGATATTactgaatatttaatgaatatcgACGCAGAAAGTGATTCTGATGCTATTgaagagatttcTAATGAAGatgaaggaaaaaaaagtattcaagtgaaaaatataaaattcaatctacAGAAAAATACTTCGAACTCTCCCGCTAAAATCTTTGATTTATCATTAGCGGTTGTGACTACGCTTACTGTAGAACAACAAGTAGAAGAATTagatattttgagaaaaagcAATGATTATGTCAATGCGCCGTTCAAATGTGAACCATGTGCAAAGggtttttcatatgaaattgtttatgAGAAGCACAAAGAAAAACATGAAGCAgtGTCGGGGCAATATGTTTGTCAGTTATGCACTTTGCATTTTAGCACAAAACGAAATTTGACCAATCATATGAATACCCATACTAATCGTTATACGTGTAGTATATGTAACAAAGTCCTAATTAGTAAACAAAGTATGATGTCTCATATGTATACAGAACATAACGCAGCAGAACAACAAGTAAAGTgtgatttatgtgaaaaagtCTATAAAAACAGGTATTCTTATGCCAAGCATATgagaattcataaaaattcaaaagaacatAAGTGCCACTTATGCCATAAAGTGTTTTTATGGAAAGATAATCTTAACAGGCATTTAACaaatcacaaaaaagaaaaacctttttcatgtaaaatgtgccctaaatcattttcattaaaacaaaatttgaaagatcATTTAAAAGCACATTCGAATATAACAAACATAGATACAATGAGTATAGATgataaaacgttttattgcGTTGAATGTGACTTGTCTTATACGACACAGGCAAAGCTAAATCATCATTTAAAAAGAGGAACTCGACACTTACAACCGGAACAATTCAAATTTGCATGTAAATTTTGTGACAAACGTTATGTGAATAACTTTCAACTGTCTACTCATACTGATAGagatcatttaaataaacgtTCTCAAGTATGTCAATTTTGTGACGCAGCATTTGTAAGTAGTAGAACTCTTCAGGCACATATAAAGTCAGTACATGAAGGTTATAGAAAACCACGCACTCACATGTGTGAAGTTTGTAGTAAAGGATTTCCGgATAAAAGAATACTGCAAGCTCATTTAAGAACCCACACTGGAGAAAGACCCTATTCTTGTCAATATTGCAGTGCTACATTTGCTCATTCGGGAGCTAGATATACACATATTAAGCTGGTTCATCtcaaaattaagaaaaattctaGTAAGAAAAGTTTGGGTAtgaaaaatacagaaaaaaatgtatccgTAAATAATCTATCGAATGTTGAAAAAGTGAATGATTCGTCATCGGTAAAATTATTGGGATTCGATAAATCTAAAGAAATTAAAACTGAATCAATTGAAACTACTAATAAGAGAAGATTTCAATAA
- Protein Sequence
- MSSICRGCLCVSADNFVSPVPPNLAEHFEFLIGQLANEILEIEKKDLKPSTLSRSPIDITEYLMNIDAESDSDAIEEISNEDEGKKSIQVKNIKFNLQKNTSNSPAKIFDLSLAVVTTLTVEQQVEELDILRKSNDYVNAPFKCEPCAKGFSYEIVYEKHKEKHEAVSGQYVCQLCTLHFSTKRNLTNHMNTHTNRYTCSICNKVLISKQSMMSHMYTEHNAAEQQVKCDLCEKVYKNRYSYAKHMRIHKNSKEHKCHLCHKVFLWKDNLNRHLTNHKKEKPFSCKMCPKSFSLKQNLKDHLKAHSNITNIDTMSIDDKTFYCVECDLSYTTQAKLNHHLKRGTRHLQPEQFKFACKFCDKRYVNNFQLSTHTDRDHLNKRSQVCQFCDAAFVSSRTLQAHIKSVHEGYRKPRTHMCEVCSKGFPDKRILQAHLRTHTGERPYSCQYCSATFAHSGARYTHIKLVHLKIKKNSSKKSLGMKNTEKNVSVNNLSNVEKVNDSSSVKLLGFDKSKEIKTESIETTNKRRFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -