Hten008650.1
Basic Information
- Insect
- Hydropsyche tenuis
- Gene Symbol
- -
- Assembly
- GCA_009617725.1
- Location
- VTON01000061.1:643599-645627[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.11 8 7.1 0.8 3 23 25 46 23 46 0.93 2 11 0.00055 0.041 14.3 6.6 1 23 81 104 81 104 0.98 3 11 4.2e-07 3.1e-05 24.2 1.6 2 23 109 131 108 131 0.94 4 11 0.00034 0.025 15.0 0.6 1 23 136 158 136 158 0.98 5 11 8.8e-09 6.5e-07 29.4 1.4 1 23 164 186 164 186 0.98 6 11 6.8e-05 0.005 17.2 0.5 3 23 192 212 190 212 0.92 7 11 0.00012 0.0085 16.5 2.5 1 23 218 240 218 240 0.98 8 11 1.1e-05 0.00082 19.7 0.8 3 23 248 268 247 268 0.98 9 11 0.0005 0.037 14.5 5.1 1 23 274 297 274 297 0.98 10 11 0.00026 0.019 15.4 5.1 1 23 316 338 316 338 0.98 11 11 0.0014 0.1 13.1 4.9 1 23 372 395 372 395 0.98
Sequence Information
- Coding Sequence
- ATGAGCGACCACCCCGGTGATACTTCAAAAGACATCGAAAACTATAATTGGCGAAAAAGATGTGGAATTCTTTGTAGACAATGCAATAGAATATACActaaagaaattaattattacagGCACTATTCTGAAAAGCATCCCGGACAAGACATAATTTTTACTTGCACATTATGCCAAGAGGATatagataatttcaaaaaatttcgaaatcattGCTATCGCCATGTGATCGCAGACAGATACAAgTGTGATTTTTGCACCAAGTTATTTTCCCAAAAATGTCATCTCAACGAACACATTGAAACTTTTCACGGAAATGCTTTGAACTGTAAAATATgtcaaaaatcttttaaaactACCTCGAATTTAAATAGGCATGTCCGCgaattacataatacaaaagagTATCGTTGCGACGATTGTGGTAAAATtttacattctGTCACGAGCTTACAAGTTCATGTTTCCACTCacaaattagaaaattattatatgtgtgATTTGTGTGGTAAAAGATTTTCACAGAAAAGTAATCTCAAAactcacataaaaattcacgAGGCTCCattgttttgcaatttttGTCCAAAAACTTTTGCTAACAAAAATCAACTCAACGAACATCTTGTAGCACATtcaaataccaaaaaatatgaatgcacaatttgtaaaaaatggtACAAAACAgaaagttatttgaaaaaacatttaaaaaatcacacagAAGAAAAACCGttgttatgtaatatttgtaataaacgaTTTTCCAGGATAGTGAAGCTCAGAGACCATATGAATGTTCATATGGGTGAAAAAccttataaatgtaaatattgtgaaatgaCGTTCACCAATAACCCAAATTGCTTAAAACATATTCGCAAACGTCATAAAATTGACCCTAAAACCGGAGAACCTTTGGATTTGAATgcttctttaaaaaaatacgaatgtACATCTTGTAATAAATGCTACAAAtcagaaatttatttgaaaaaacatttgaaaaatcacacAGAAGAAAAACCAATGCTATGTAATATTTCGAATGAACAACATTCCAGGATAGTGAAGCTCACGGACCATATGAATGTTCATATGGGTAAAAAACCttataaatgcaaatattgTGAAACAACGTTCACCAGTAATCTAAATTGCTTGAAACATATTCGCATACGTCATAAAATTGACCTTAATACAGGAAAACCTTTAGATTTGAATGCTTCTAAAAATGAATCagaaataattctaaaaaaaattgatttgcaaAAATCATCAGATAATTCGGATAATAATAATGGTATGGATATTGATAGAGAGAGcttcaataattatattccGATGAATATTAATGTTACAAgtcgagaaaaatatatttgtagtGAATCCATCgccaataataatataaataaaaagcctTTGACATCTCCATtgcgattttatcaaaataatgaatgttttgaGTTCACAGAGAACAatacaaatacgaaaatatatccCACGGTCAATTCTTCTACTGAACTAGGTAATACACTAGTTTTAGAAAACactgaaaacaaatttgaaatgtttcaaaattctgGGACCGCATCagattttaatatcaatcCCTCAAATCAGAAACAAAATGATACACTACAAGAATCGATGTATCAGTCTGAAAATGTACTATCTAATATGATAACTGATAACTTAGAATCAAAgttaattgaagattttttgcCTCATTACTTTCCTGAATTTCAATCTCAGAATTCGCTGAATTTTTTGAGCTATGAGgaaatacatcaaatattagaattaacAGAATCTGATGGAATTTCTGAAATACAAATGATGGAATCGAGtggaaataaaactaattccACTTGTTATTActga
- Protein Sequence
- MSDHPGDTSKDIENYNWRKRCGILCRQCNRIYTKEINYYRHYSEKHPGQDIIFTCTLCQEDIDNFKKFRNHCYRHVIADRYKCDFCTKLFSQKCHLNEHIETFHGNALNCKICQKSFKTTSNLNRHVRELHNTKEYRCDDCGKILHSVTSLQVHVSTHKLENYYMCDLCGKRFSQKSNLKTHIKIHEAPLFCNFCPKTFANKNQLNEHLVAHSNTKKYECTICKKWYKTESYLKKHLKNHTEEKPLLCNICNKRFSRIVKLRDHMNVHMGEKPYKCKYCEMTFTNNPNCLKHIRKRHKIDPKTGEPLDLNASLKKYECTSCNKCYKSEIYLKKHLKNHTEEKPMLCNISNEQHSRIVKLTDHMNVHMGKKPYKCKYCETTFTSNLNCLKHIRIRHKIDLNTGKPLDLNASKNESEIILKKIDLQKSSDNSDNNNGMDIDRESFNNYIPMNINVTSREKYICSESIANNNINKKPLTSPLRFYQNNECFEFTENNTNTKIYPTVNSSTELGNTLVLENTENKFEMFQNSGTASDFNINPSNQKQNDTLQESMYQSENVLSNMITDNLESKLIEDFLPHYFPEFQSQNSLNFLSYEEIHQILELTESDGISEIQMMESSGNKTNSTCYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -