Basic Information

Insect: Hydropsyche tenuis
Gene Symbol: -
Assembly: GCA_009617725.1
Location: VTON01000024.1:215022-219267[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.39 28 5.4 1.3 1 23 194 216 194 216 0.93

2 14 1.3e-05 0.00099 19.4 4.6 1 23 220 242 220 242 0.98

3 14 0.0002 0.015 15.7 0.1 2 23 250 272 249 272 0.94

4 14 0.19 14 6.3 9.5 1 20 277 296 277 299 0.90

5 14 0.00053 0.039 14.4 6.8 2 23 308 329 307 329 0.97

6 14 1.5e-05 0.0011 19.3 0.7 1 23 335 358 335 358 0.94

7 14 6e-05 0.0044 17.4 1.7 1 23 364 386 364 386 0.98

8 14 3.9e-06 0.00029 21.1 0.6 1 23 392 414 392 414 0.98

9 14 3e-06 0.00022 21.5 1.5 1 23 458 480 458 480 0.98

10 14 0.00069 0.051 14.0 0.4 1 23 484 506 484 506 0.99

11 14 3e-05 0.0022 18.3 2.6 1 23 513 536 513 536 0.98

12 14 0.028 2 9.0 3.7 1 23 542 564 542 564 0.98

13 14 6.6e-06 0.00048 20.4 0.4 1 23 570 592 570 592 0.98

14 14 2.1e-05 0.0015 18.8 2.2 1 23 598 620 598 620 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.39	28	5.4	1.3	1	23	194	216	194	216	0.93
2	14	1.3e-05	0.00099	19.4	4.6	1	23	220	242	220	242	0.98
3	14	0.0002	0.015	15.7	0.1	2	23	250	272	249	272	0.94
4	14	0.19	14	6.3	9.5	1	20	277	296	277	299	0.90
5	14	0.00053	0.039	14.4	6.8	2	23	308	329	307	329	0.97
6	14	1.5e-05	0.0011	19.3	0.7	1	23	335	358	335	358	0.94
7	14	6e-05	0.0044	17.4	1.7	1	23	364	386	364	386	0.98
8	14	3.9e-06	0.00029	21.1	0.6	1	23	392	414	392	414	0.98
9	14	3e-06	0.00022	21.5	1.5	1	23	458	480	458	480	0.98
10	14	0.00069	0.051	14.0	0.4	1	23	484	506	484	506	0.99
11	14	3e-05	0.0022	18.3	2.6	1	23	513	536	513	536	0.98
12	14	0.028	2	9.0	3.7	1	23	542	564	542	564	0.98
13	14	6.6e-06	0.00048	20.4	0.4	1	23	570	592	570	592	0.98
14	14	2.1e-05	0.0015	18.8	2.2	1	23	598	620	598	620	0.99

Sequence Information

Coding Sequence: ATGGCGCAAaagtccaattttttttcagattttgaaTTACCTTTAAGTATATCTGAAATTTGTAGAATTTGTTTGCGTcgaaaaagaaatttaatatcattgtATTCAAAAGACGGGGGATTGTACAAAGATTTGATAACTGTTTCTCAATTGCATATATTTCTTGGTGATGGTCTGCCATCACAAATTTGTAATATGTGCCAACGAAAAATGAATGAAGctttaaaattcaaagaacAAGCAATAGCAGCAGACGATATTTTACGAAATCAAAATAGTGTCGCCGAATATGTACTCaCGAATAAGCTTTCCATCTCATTGAACTCCAAAAAAAATGGTGATGAagataataagaaaatatcacAAGACAACTTTAAACAAATCAGTTGCAACAttaatgatgataaaaatacaaattcaaaaagcaTATCTCTTGAGCTCGACTCTaaaataaacactAACAGCGAAAATCAACcagtgaaaaagaaaaaagttattgaaaaaaaatatatcaaaagaaggaaaatcaagaaaattcaGAAGATTCATATTCAAGATAAGCACGCACCAAATCCTGTTTATTCGTGTATTAAATGTGAAAACGTATCAAAGACTAAATCAGCATATAATAAGCACAAACttctacattttaaaaaacatacttgtactatttgcaaaaaaacattcaattataGGCAGTCCctcaataaacatttaaatatacatggcAGGAAAGAAACACAACTTCCTTGTCCAGATTGTGGACTTTTGTTTGTAGACGAATTTCAGTTAAACAGGCATACTAAACTAGCACACACAgGAGAAAACCATGAATGTATACattgtcataaaatttttagtcaTAAAAGTCGTTTGACTCGACATTTATTATGCCATCAAAATGATGAGGAAAAACGATTGGAGTGTTATTATTGTACGAAAAGGTTTAATTACTATCATCATTTGAGAAACCATGAGAGAACACATACAGGAGCCAAACCGTACCTTTGTAACTTATGTGGAAAAGgTTTTGCGCAATCTTACAATCTCACTTTACACAACAAAAAGTTACATCAAGAAGTATTACCTTTTACTTGCAATGTatgccaaaaaaaatttgtcaacATTCATAGATTGAATAGACATATCGCTATTCATGCAGaagtAAAAGATTTCTCGTGCAACATATGCAATAAAGGTTACTCTGATATTTCATCACTGAAAAAACATTTGGCAAggcacaaaaaaattgaaaatataacttttcctTTAACCTGTGaatctgaaattcaaaatgatgAAAAGATATCAATTAAGATGGCCAATAAATACCTTTTTAGTGCGAAAAAATCGTCAAATGTAGAAAAACCATATACGTGCAAgatTTGTAAAAAggcattttcaaaattacaaaatcttACTGTACATTTGACAtcgcatacatataaatttaaatgcaatttGTGTAACAGAAGGTTTGCATTAGTAAACGTATTGGAAGCTCATTTGAAAACTCATGAAATTAAACagaaaaaatattcatgtgaCCATTGTaatgatatttattcgaatccaTCTCATCTAAGAACTCATATAAAAACTGCACATATCGGTTTTAGGCCGCATAAATGCTCTGATTGTTCAGATTCTTTTCTTCATGCCAAAGATCTTACTCTTCATATTCGTCGGCATAAgggtataAAACCTTTTCCATGTACTTTATGCAGTAAAGAATTTGCTACTTCTTCAGCTTTAGCTACTCATTTTCGTACACATACTAGGTTAAAACCGTACAAATGCAAAATATGTTCATATAGCAGTACTACTTCGTCTACTCTTTTGTATCACATGAATTCTCATTCTTTAAAAGATAGACTCAAAGCTGATAATGACTCTCTCGATAAAATGAAATCTTTCACATcaactttattgaaaatgagaGACAAAAATAGTGCTCCAGTTTGTGATGTAGCTGAAAATACtactaatatgaaattatcagATGATATACGTAGCTTGTCTTCAAATACgactttaaaaaattcaagctTGAATGATATCTCTGGCTTTGGATTACAAAACTATGAAAATCcgcaaaatatttccaattctGAAAgtgttgaattaattttaccTGTAAATTga
Protein Sequence: MAQKSNFFSDFELPLSISEICRICLRRKRNLISLYSKDGGLYKDLITVSQLHIFLGDGLPSQICNMCQRKMNEALKFKEQAIAADDILRNQNSVAEYVLTNKLSISLNSKKNGDEDNKKISQDNFKQISCNINDDKNTNSKSISLELDSKINTNSENQPVKKKKVIEKKYIKRRKIKKIQKIHIQDKHAPNPVYSCIKCENVSKTKSAYNKHKLLHFKKHTCTICKKTFNYRQSLNKHLNIHGRKETQLPCPDCGLLFVDEFQLNRHTKLAHTGENHECIHCHKIFSHKSRLTRHLLCHQNDEEKRLECYYCTKRFNYYHHLRNHERTHTGAKPYLCNLCGKGFAQSYNLTLHNKKLHQEVLPFTCNVCQKKFVNIHRLNRHIAIHAEVKDFSCNICNKGYSDISSLKKHLARHKKIENITFPLTCESEIQNDEKISIKMANKYLFSAKKSSNVEKPYTCKICKKAFSKLQNLTVHLTSHTYKFKCNLCNRRFALVNVLEAHLKTHEIKQKKYSCDHCNDIYSNPSHLRTHIKTAHIGFRPHKCSDCSDSFLHAKDLTLHIRRHKGIKPFPCTLCSKEFATSSALATHFRTHTRLKPYKCKICSYSSTTSSTLLYHMNSHSLKDRLKADNDSLDKMKSFTSTLLKMRDKNSAPVCDVAENTTNMKLSDDIRSLSSNTTLKNSSLNDISGFGLQNYENPQNISNSESVELILPVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -