Hten006788.1
Basic Information
- Insect
- Hydropsyche tenuis
- Gene Symbol
- -
- Assembly
- GCA_009617725.1
- Location
- VTON01000216.1:46511-54450[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.043 3.2 8.4 3.5 1 23 195 218 195 218 0.94 2 19 9.9e-05 0.0073 16.7 0.8 2 23 252 273 251 273 0.96 3 19 0.016 1.2 9.8 0.3 1 23 280 302 280 302 0.95 4 19 0.00027 0.019 15.4 1.0 2 23 312 334 311 334 0.95 5 19 0.00032 0.024 15.1 2.6 1 23 340 362 340 362 0.97 6 19 1.6e-05 0.0012 19.2 1.7 1 23 368 390 368 390 0.97 7 19 0.0023 0.17 12.4 1.5 1 23 395 417 395 417 0.98 8 19 3.7e-05 0.0027 18.0 3.8 3 23 425 445 423 445 0.96 9 19 1.1e-05 0.00078 19.8 1.9 1 23 451 474 451 474 0.97 10 19 0.0066 0.49 11.0 2.5 1 23 691 714 691 714 0.92 11 19 3.3 2.4e+02 2.5 4.0 6 23 724 742 722 742 0.95 12 19 0.00043 0.032 14.7 0.6 1 23 747 769 747 769 0.98 13 19 0.0002 0.014 15.8 0.4 1 23 783 805 783 805 0.96 14 19 0.082 6 7.5 0.1 2 23 815 837 814 837 0.93 15 19 0.00044 0.032 14.7 1.8 2 23 844 865 843 865 0.95 16 19 0.00018 0.013 15.9 3.0 1 23 871 893 871 893 0.98 17 19 0.06 4.4 8.0 0.7 1 23 898 920 898 920 0.96 18 19 0.00018 0.013 15.9 2.6 1 23 926 948 926 948 0.97 19 19 0.00018 0.013 15.9 1.2 1 23 954 977 954 977 0.97
Sequence Information
- Coding Sequence
- ATGTCTGTCAGTTGGGGTGATTTGTGTCGTTTGTGTGCTGCACATTCTGATTTAAATGAACATACAATCAATCACACATCAAATTTATCAcaaatcatattgaaatactTATCCATAACgataaaaaatgatgaagAACTTTCAACCAGAATATGTCTTAAATGTGAAGAAAAAATCACAGATTTCCACACATTTGCTATGCAATGTGAAAGGATTCAGTCGATGTTTGTAgcgtataaaaatgataatattatcaacGGAATAAACCATCAACTTGTCAAAACCGAAGATAATGTCGAGATTCAAATCAAACAAGAATTCAGAGATTATaaCGATGACCATAATATGGAAGAATGCACAGAGTTCATAGAACCGATTGAAATAACGAAAGGTAAAAACTCGTTGATAAAAGACAGAAGAAAAAAAGTGCgcaaaaagagaaaaattatCCGTCCCAAAAGTATAATTAAAGGTGTTGAAGATTTACTAAAAGatgaagtCAAAGATTGCATCAaaaatgaagataaaaaatgtatacttgataacaaaatcatgaaaaaagatgaattcaatattattagATATAAATGTCACATATGCGAAGTCGAATgcaaaaattggaaatttttgagtttgcACACTTCAAACGTGCACGGAACTAATCcacaaataaaatgcatttgcttcaaaatattgtttactATAAATCAGTTCAAAATCACAAGAAGAAACACAATCCTAACAAGATGTTTAATcTGCAATTATTGTCAGAAAATGTTCAGTTCAAAAAAAggaatcaaaatacatatttacactcacttaacgaaaaataaaccatacatatgttataaatgTGCCAAAAGTTTTCCTAGTCTCTACGTATTGAAAATGCATGAAGATATTCACAGGCCTCGAGAAGAACGTTACATATGGAATTgcgaaatatgtaaaataaaattttcatcgaaaaattcacTCGTAACTCATAAAagaataaaacatgaaaaacttCGTCCTTTCATGTGTGATTTATGTGGTTATTCTTgttctttaaaaaatgatttgaaaagaCATAGGATTTCTCATAGCAATGAAAAGAATTATATTTGCGAAAAGTGTAATAAaagatttaaaacCGATCAGACTCTTCAACGTCATATAGATTCTCATGCCGATACGGCTTATCAATGTCCACATTGCCCAATGTTACTAAACACTCGCAGGACTTTAAGGAATCATCTTTATGTTCATGATGAACTTGCAAATCATCTTTGTTCATTGTGCGAAAAGGCATTCAAAAGAAGAAAagatttaatgagcCACATGAAAAAACACACTGGCGAACGTCCGTATTCGTGTCCATGGTGTCCATGCACATTTTCTAATGCTTCAAATTTCAGAATTCACAAACGACAATTGCACCCTACTGAACTTGAATTAGCCGATAAAACCAATCCTTACCTACGCTCCAAAGATGAAAAGAAGGGTATGCCGAAGAAAATCATTCACACCATAATAAAGACTCATCCTGTTCCTTTGAAatcatctaattgtaagacagcTGAATTGAATGATCtacataatattgataaaaaagaaaagaaaaaacgcCCAAATTTGAGAAGTACGATGGAAATTGTAAAAAGTGATGACAAACTTTCAAGCAAAATTTGTCATACGTGTGAAGAAAAAGTCACCGAATTCCACACATTTGCTACTCAATGTGAAAGAATTCAGTTGATGTTCATAGCGTATAAAGATAATGATGTTACCGATAAGACAAATCATCAACTTGTAAAAACCGAAGTTATTGAAGGGATTCAAATAAAAGAGGAAGTCGACAATTATaatgatgactataattttgaagaatGCGCTGAATTTATTGAACCGATCGAAATAAAGGAAACTAAAAATCCGTTGATAGAagacaaaacaaataaagtgtgtacaaagataaaaataatcccTCCTAAATGTATAATTAACGATGGAGCTTTATCAAACAACGATATAAAATGTGAACTTGattacgaaattgaaaaaaaagatgatttcaatattattagATATAAATGTCACAAATGCGAAATCGAATGCAAAGATTGGAATTCTTTGAGTGTGCATACTTCAGACGTGCACGGAGCTAATCCACAAATAAAATGCTTTTGCtcaaaaatattgactaaTAAGCgatcattttataaacacaAGAGGAAAAATCATCCCGATAGATGTTTTGTCTGCGATTATTGTCAGAAAATGTATGCTTTGAAGGAACATATCGAAATACATATTCTCACACACATGTTAAAAActaaatcgtttaaaaaaaataaaaatcattacgcGTGTGGCAAATGTACTAAAAGTTTTTCTTCTCTCggatttttaaaacaacatgAAATCATACATAAGCCTGAAGAAGAACGTTACATATGGCCCTGCGAAATATGCGATATGAAattTGCATGGAAAAATTCGGTCGAAAGGCACAAAAGAGCagtacatgaaaaaatacgtCCTATGATGTGTGATATGTGTGGTTATTCTTGTTCTACCGAAACTGAATTGAGAAAACATAAAGCTTCTCATAGTActgaaaagaattttatttgcaacAAGTGTAATAAAGGatttaAATCGGATCATGAACTTCGTCTTCATAGAGAAACTCATGCCGATACGGTTTATCAATGTCCACATTGTCCAATGTTGCTCAATACGCGTGGGATTTTAAGAAAACATCTTTTCGTTCACGATGAATCTGTAAATCACCCTTGTTCAGTGTGCAATAAGATATTCAAATGGAGACAAgatttaaagaagcATATGAGACAACACACTGGCGAACGTCCGTATACGTGTCCATGGTGTCtagaaaaattttctagtGCTTCAACTTTGAGATATCACAAACAACGGACACATCCTGCTGAATTTAAATTGGCTGATAAACACAATCCTTACAAACGCAGTGCagACAAGAAGAAAGATatgccgaaaaaaatcattcacacaaaaataaagaCTCGTACTGTTCTTTCGAAATCATCTAACACGACTGAATTGAGTGAACtacataatattgataaaaaagaaTCAGAAGAAACGGCCAACTTGAGTAGTTCACAGGAAAttgtttaa
- Protein Sequence
- MSVSWGDLCRLCAAHSDLNEHTINHTSNLSQIILKYLSITIKNDEELSTRICLKCEEKITDFHTFAMQCERIQSMFVAYKNDNIINGINHQLVKTEDNVEIQIKQEFRDYNDDHNMEECTEFIEPIEITKGKNSLIKDRRKKVRKKRKIIRPKSIIKGVEDLLKDEVKDCIKNEDKKCILDNKIMKKDEFNIIRYKCHICEVECKNWKFLSLHTSNVHGTNPQIKCICFKILFTINQFKITRRNTILTRCLICNYCQKMFSSKKGIKIHIYTHLTKNKPYICYKCAKSFPSLYVLKMHEDIHRPREERYIWNCEICKIKFSSKNSLVTHKRIKHEKLRPFMCDLCGYSCSLKNDLKRHRISHSNEKNYICEKCNKRFKTDQTLQRHIDSHADTAYQCPHCPMLLNTRRTLRNHLYVHDELANHLCSLCEKAFKRRKDLMSHMKKHTGERPYSCPWCPCTFSNASNFRIHKRQLHPTELELADKTNPYLRSKDEKKGMPKKIIHTIIKTHPVPLKSSNCKTAELNDLHNIDKKEKKKRPNLRSTMEIVKSDDKLSSKICHTCEEKVTEFHTFATQCERIQLMFIAYKDNDVTDKTNHQLVKTEVIEGIQIKEEVDNYNDDYNFEECAEFIEPIEIKETKNPLIEDKTNKVCTKIKIIPPKCIINDGALSNNDIKCELDYEIEKKDDFNIIRYKCHKCEIECKDWNSLSVHTSDVHGANPQIKCFCSKILTNKRSFYKHKRKNHPDRCFVCDYCQKMYALKEHIEIHILTHMLKTKSFKKNKNHYACGKCTKSFSSLGFLKQHEIIHKPEEERYIWPCEICDMKFAWKNSVERHKRAVHEKIRPMMCDMCGYSCSTETELRKHKASHSTEKNFICNKCNKGFKSDHELRLHRETHADTVYQCPHCPMLLNTRGILRKHLFVHDESVNHPCSVCNKIFKWRQDLKKHMRQHTGERPYTCPWCLEKFSSASTLRYHKQRTHPAEFKLADKHNPYKRSADKKKDMPKKIIHTKIKTRTVLSKSSNTTELSELHNIDKKESEETANLSSSQEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -