Basic Information

Insect: Hydropsyche tenuis
Gene Symbol: -
Assembly: GCA_009617725.1
Location: VTON01000096.1:899608-903934[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.42 31 5.3 1.9 3 23 188 208 186 208 0.94

2 16 0.72 53 4.5 1.5 2 22 218 238 217 240 0.78

3 16 0.0021 0.16 12.5 0.7 1 23 246 268 246 268 0.97

4 16 0.0011 0.08 13.4 0.2 3 23 314 335 312 335 0.92

5 16 2.6e-06 0.00019 21.7 2.3 1 23 356 378 356 378 0.97

6 16 0.0041 0.3 11.6 1.4 1 23 384 409 384 409 0.95

7 16 0.00012 0.0087 16.5 6.7 1 23 414 436 414 436 0.96

8 16 8e-05 0.0058 17.0 7.7 1 23 442 464 442 464 0.98

9 16 0.0023 0.17 12.4 0.3 1 23 470 492 470 492 0.95

10 16 2.3e-05 0.0017 18.7 0.5 1 23 498 521 498 521 0.97

11 16 4.5e-07 3.3e-05 24.1 1.4 1 23 527 550 527 550 0.95

12 16 0.035 2.6 8.7 0.8 2 23 574 595 573 595 0.96

13 16 5.9e-06 0.00043 20.6 0.2 1 23 599 621 599 621 0.98

14 16 4.9e-05 0.0036 17.6 2.6 1 23 628 651 628 651 0.95

15 16 3.8e-07 2.8e-05 24.3 1.9 1 23 686 708 686 708 0.99

16 16 0.0097 0.71 10.4 5.0 1 23 714 736 714 736 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.42	31	5.3	1.9	3	23	188	208	186	208	0.94
2	16	0.72	53	4.5	1.5	2	22	218	238	217	240	0.78
3	16	0.0021	0.16	12.5	0.7	1	23	246	268	246	268	0.97
4	16	0.0011	0.08	13.4	0.2	3	23	314	335	312	335	0.92
5	16	2.6e-06	0.00019	21.7	2.3	1	23	356	378	356	378	0.97
6	16	0.0041	0.3	11.6	1.4	1	23	384	409	384	409	0.95
7	16	0.00012	0.0087	16.5	6.7	1	23	414	436	414	436	0.96
8	16	8e-05	0.0058	17.0	7.7	1	23	442	464	442	464	0.98
9	16	0.0023	0.17	12.4	0.3	1	23	470	492	470	492	0.95
10	16	2.3e-05	0.0017	18.7	0.5	1	23	498	521	498	521	0.97
11	16	4.5e-07	3.3e-05	24.1	1.4	1	23	527	550	527	550	0.95
12	16	0.035	2.6	8.7	0.8	2	23	574	595	573	595	0.96
13	16	5.9e-06	0.00043	20.6	0.2	1	23	599	621	599	621	0.98
14	16	4.9e-05	0.0036	17.6	2.6	1	23	628	651	628	651	0.95
15	16	3.8e-07	2.8e-05	24.3	1.9	1	23	686	708	686	708	0.99
16	16	0.0097	0.71	10.4	5.0	1	23	714	736	714	736	0.98

Sequence Information

Coding Sequence: atggataCGATCGACAAGAGTCGTTTCGGAAACGTTTGTCGGACTTGTTTAAGAGAAGAACCCGTTATGAAAGAATTGTTTGGCAACGATAGTCATTTTCCTGCATTTCACGAAATGATTATGTCATGTACTAGTGTGATGGTTAAAGAAGATGATGGTCTTCCTAGTAAGTTGTGCGAATCTTGTGCAGTCCTATTAccaaagtttttttcattcaagtCTCAATGTGAATCTGCCGATGCTCGTTTACGACATATATTGCAAAACACTTATTCTGAAgtcgaaattaaatatgaagttGAGATGGAGTTAGAGGgGAAGTTTTTTGTAGCTGGTGATATTAATGATGAACATTATAGTaacataacaaatataaaaattgttcattCTACAAACttagaagaaaatttaaaaaaagattactCTATTAATAAAGCAAAATTGTCTAAAGAAAGTagttttatcaattataaagaaaaaaaagacaataataTGATTGATGGCAGAATTTCTTCTTCTACAAATAAAaaaactaAATCTGTTTCTGTATGTGCATTTGGTTGTCGTAAATGTGATCTTCATTTTCTTTCATGGGATGAACTCGAAAAGCACAATTTTAGTCATGATAAAACCCAATTACCTCCTAAATTATCATGCAGATATTGTAATAAGACGTTCCTCCATCAAAGAAATATTAACCCTCACATAACACAAATGCACAGTGATCTCAAAAGATTTCAATGTGGATATTGTGGTAAACGTTGGAAAGATGTTCAAAACTTGAAATTACATTTAACCAATCATTCTTCAGTGGATACTTTAATTTGCACACCAGAACTGCCTGAAAATGACTGCAACTttgCCCTTGACAATTCTTTCAAGGaaattaaagataaaaaatttcaaacaatatctGAAAGTGATATACATGTTTTAATTTGTGGTTCATgtgatcaaaattttactgatTCAAAGTCTTTACAGTCACATTTAATCCAAGAACATTCAATAGAAATGAAGGAATCAAAAACTGAACTTAATTCAGATGAGATggacaatttgaaatatgcatGCAGTATTTGCAATAAGCGTTTCAAAACGAGAACTTATTTGAAACGGCACGAGATTACACATGATCCTGATAAACCTTTTCATTGCAAAtttggAAGATGTCCATGGTCATTTGCTTCTGATCATGAGCTAACAGTTCATATTAACGTCAATCATTCTGATGGTATACACGAATGCAACTTTTGTCATAAAGAATTCAAGCACGCTCGAAACTTACGGCAACATATGGCACTCCATAAATTGACAAAACGTTTTGAATGTGAACATTGTCacaaagGTTTCAATTATTtgcacaatttgaaaaatcacgaAAGAACTCATACTGGTGATTTGCCGTATTTGTGTCAAGAATGTGGTCAAGCCTTTGCTACTAAGGATAGattAGCTTTTCACATAAAACGGCATTCTGATGATCGCCCTTTTTCTTGTCAAGtatgcgataaaaaatatgtttccaGTGGAGAACTCAATGCTCACAAAAAAAGGATTCATACTAatgAACGTCCTTTTATGTGTTCTGTCTGtggaaaaacttttcgaacACGTAATTATTTAACGAAACATATTAAAGCCTTGCATAGCAGTAAACATGAGAATTTAAGCAGTAATGATTTAgacaatttacaaaatcaagAGCATAGTATTTTATCATGTaacatttgtaaatttcaagCTGAAACTCGACAAGAACTAGATAAGCATATGAAAaatcatACATGTCAGTATTTCTGTCCTTATTGTgctaaatcattttcattagcAAGTGCTTTAGAAACtcatatcaaaatacattCTGATGAAGATAGATCTCATGTGTGTTCTACATGTGGCATAGCATTCAAACGTGCTGATCATCTTCGTTCACATGTAACCAGAAAGCATGGCACTCCATCGAAATCGTTTAAATGTTCTTGTTGTATACGTTCGTTCACAGCTATTtctgatttgaaaaaacactcacacacacacgaacGCCGTAAACCATACAAATGTAAAGAATGTGGACGATGTTTCAGCCAATCGGGTGCATTGAGGATTCATTCTCGCATTCATACCAACGAACGTCCTTATATTTGTGGTGTTTGTCATTGCTCTCATCGTACAGCTGGTTCACTTACATCCCATATGCGTACTCACACTACTTCACTGACGACTTTTATAacacaaaataataataaaaaagctaaTATCATGGATAGTCAACAACAAAATCTTCCAAATGACATAACAATGGTAAAAAAGGAAGAATCTAtgataaaattagaaaaaaatgaagatactGTGATTACTAcagtgaaaaatgaaatagatCCTTTGGGTGTTGAAAATTCTGTCAATGATGAAGATGTATGTAAATGCAGGTGGTCTCTGGAGTCTCCGAGGATTGCCATCGATGGATTCGATATTCCGTATGGAAGATCTCTGTGCTACCTTGGAGTTCAGCTTGACGACAGGTTGAGCTTCAGGGAGCATATTCTGCGGGCAACGGGAAGGGCCTCAAACACGGTGGCTGCCTTGGCGCCAATCATGCCGAATTTGGGAGGACCAAGGCAATCCAGAAGAAAGCTCTATGCCAGCGTCGTCCACTCGATCCTTCTCTACGGGGCTCCGATCTGGGCTGACCGCTTGAGTAGGGAGTGGAACAAGGTGAGCTTAGCCAGGGCTCAGAGATGGGGTGCGCTGAGGGTGGTCTCTGCGTACTCTACGGTGTCGGCAGACGCAGCCCTGGTCATTGCGGGCTTGCCTCCCATTGACCTATTGGCAGAGGAGAGCAGGGAGCTGCACGAGTGCGCCAGGGGGGAGCCCGGTGTGAACATGGCCTTGAGAAAGAGACAGTGTCGATTGGAGCTGCATCATAAATGGCAGGTTCGATGGGACGCTTGTCCCTGGGGGGAGATGGACCCGCAGGCTGATCCCGAGGATTGA
Protein Sequence: MDTIDKSRFGNVCRTCLREEPVMKELFGNDSHFPAFHEMIMSCTSVMVKEDDGLPSKLCESCAVLLPKFFSFKSQCESADARLRHILQNTYSEVEIKYEVEMELEGKFFVAGDINDEHYSNITNIKIVHSTNLEENLKKDYSINKAKLSKESSFINYKEKKDNNMIDGRISSSTNKKTKSVSVCAFGCRKCDLHFLSWDELEKHNFSHDKTQLPPKLSCRYCNKTFLHQRNINPHITQMHSDLKRFQCGYCGKRWKDVQNLKLHLTNHSSVDTLICTPELPENDCNFALDNSFKEIKDKKFQTISESDIHVLICGSCDQNFTDSKSLQSHLIQEHSIEMKESKTELNSDEMDNLKYACSICNKRFKTRTYLKRHEITHDPDKPFHCKFGRCPWSFASDHELTVHINVNHSDGIHECNFCHKEFKHARNLRQHMALHKLTKRFECEHCHKGFNYLHNLKNHERTHTGDLPYLCQECGQAFATKDRLAFHIKRHSDDRPFSCQVCDKKYVSSGELNAHKKRIHTNERPFMCSVCGKTFRTRNYLTKHIKALHSSKHENLSSNDLDNLQNQEHSILSCNICKFQAETRQELDKHMKNHTCQYFCPYCAKSFSLASALETHIKIHSDEDRSHVCSTCGIAFKRADHLRSHVTRKHGTPSKSFKCSCCIRSFTAISDLKKHSHTHERRKPYKCKECGRCFSQSGALRIHSRIHTNERPYICGVCHCSHRTAGSLTSHMRTHTTSLTTFITQNNNKKANIMDSQQQNLPNDITMVKKEESMIKLEKNEDTVITTVKNEIDPLGVENSVNDEDVCKCRWSLESPRIAIDGFDIPYGRSLCYLGVQLDDRLSFREHILRATGRASNTVAALAPIMPNLGGPRQSRRKLYASVVHSILLYGAPIWADRLSREWNKVSLARAQRWGALRVVSAYSTVSADAALVIAGLPPIDLLAEESRELHECARGEPGVNMALRKRQCRLELHHKWQVRWDACPWGEMDPQADPED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -