Hten016736.1
Basic Information
- Insect
- Hydropsyche tenuis
- Gene Symbol
- -
- Assembly
- GCA_009617725.1
- Location
- VTON01000112.1:512064-516719[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0052 0.38 11.3 3.7 3 23 58 78 56 78 0.97 2 12 1e-05 0.00074 19.8 0.8 1 23 84 106 84 106 0.98 3 12 0.00067 0.049 14.1 0.1 1 23 112 134 112 134 0.98 4 12 1.7e-05 0.0013 19.1 0.4 1 23 140 162 140 162 0.98 5 12 1.8e-05 0.0013 19.0 1.5 1 23 168 191 168 191 0.95 6 12 0.00018 0.013 15.9 3.5 3 23 221 241 221 241 0.99 7 12 2.2e-06 0.00016 21.9 0.6 1 23 247 269 247 269 0.99 8 12 4.8e-06 0.00036 20.8 0.6 1 23 276 298 276 298 0.98 9 12 0.00053 0.039 14.4 0.6 1 23 304 327 304 327 0.96 10 12 0.011 0.84 10.2 0.0 2 23 462 483 461 483 0.96 11 12 8.9e-07 6.5e-05 23.1 2.7 1 23 489 511 489 511 0.98 12 12 7e-06 0.00051 20.3 0.7 2 23 559 580 558 580 0.97
Sequence Information
- Coding Sequence
- ATGGATAAGTTTGATAATCTGAAATTTCAAGGATTAGATATCGATCGTGACGAATCTTCAGCATTATCTTATTTGCCTATTTTACCATTTGgagttttaatattcaaattcttggTGGAGTATCATCTGGAGTTTCTGACCAAGCATCCCGGCGAAGTATTCTTTTACGGCTGTAAACTATGCACGCACCGATTCACCTCGAGGAACAGTTTCCTGATTCACATGAAACTACATGACGTCCGCAAGAGATATCCCTGTGGAGTGTGCGACAAAGCCTACGATCGTAAATTCCAGTTGGTGCACCACCTGCGGCTGCACACTTCcgatacaccgtttgagtgcGAAGTGTGCTTCTTGGCGTTTTCAGACGAGCAGCAGTTGCTAGAGCATTCGCGCGTTCATACTTCAGACAAGCCGTTCGAGTGTCGTTACTGCTTGAAGGGGTTCCCCCAAAAGAAGGCTCTGATTGTGCATCTGCGTATGCACACAGGTGAAAGACCCTTTCCTTGCCAGTTTTGCGAAAGGACTTTCACTCAGAAAGCTCACTTGCAGGGTCACATGGTCCGTATTCATATTCCAaagaaaaaggttgaatatcacaaaattagcGATATGCAGCCGGCTACCGAGAAATCAGGGCAGCGCGAGAAATTGATCGGCTGTGACTATTGTGACAAAAAATTCACGTACGAAAGAAACAAAACGAATCACATGAAAAAGCACAGCGGAGAAGCGCAATACGAATGCGAAACATGTCAACGCACTTTCCCCACACGAAACAACTTGGCGTCGCATCTTCTCACTCACGTGTCGAGCGGCAGCCCCTTCCGATGCGACATCTGCGGAAGGGAGTTCAACATGAAACGAAATCTCATCATGCACGTCAAAAGCCACAACAACGAACGGCCGTTCGAGTGTCCCGCCTGCGAGAAGTCGTTCAAACTCAAATACTTCTTGGAGTTGCATCTGACGAGGATTCATCCGCACATAAGGTTCGAGGACTTGCCGAAAAAGATCCCCGAAGGCGTCAACCAAATACAAAAGAGTGCCGTGAGTACGATCGCTCCCATCACGCCGAACAAAAGAAAACAGAGTCAGCCAAAGAAAGTCGTTAAAGTGGATTATGAAAGTGATTCGAACGACATGAGTTACGGGGAATACTCTAGTGAAAGTGATAACGATATGAAATACGATTCGTCTGTAAACACTACCAAATTCGTGGAAGTTTATATACAAGAACCAAAGAACCTCGATGCTAAGAGAGATGATGCTACAGAGCCAAAGTCTCTGCAGATTAATTTACCTCATGACCTTCGACATGTAAAGAAGATGTTAAACGTCAAATCATCCCTTCCCGCTGCAGCTccggaaatgaaaaatatatcttgCCCGTTATGTCCCGTGATGGTGTCGAGCAAAGCCGTCCTCGCAATCCACATGAAAGAACACGACAAGAACAAACCTCACCAATGCACAATGTGCGACAAAGTTTATATACAACAAGCAAGTTTCGAAAAGCATATGAGAAAACATATGCTGGACGGAACCGCCGGAAACCACACCAACACGATTGAGCAGGACGGATACAGACTGAACTACTTTCCGCAACTGAAATCCGACGAGGGTTACCCGGATTCGGGCCAGCACGTGAAAGGCGACGGCAGGAAACCGTTGGAGTGCAAGATATGTCGGAAGAAGTACGCGCAGCCGGCCAGCTTCGAGAAACACATGAGGCAGCACTCCGAGCTGGAGGAGGCCAAGTCGGAGACGATGGTGTTCACGGATAACGTGTTCGAGAAGCTGCAGTCTCTGCGCAATTTGAAATACTCAGAGGGAAACGCTGAAAACGAACAAAGCAATGAAGGGTCGGCTCCCGAGGGCGGTTTCATTAACCCAAGTGACTTTTTAGAAGTATCTATGGATCATTCGTGa
- Protein Sequence
- MDKFDNLKFQGLDIDRDESSALSYLPILPFGVLIFKFLVEYHLEFLTKHPGEVFFYGCKLCTHRFTSRNSFLIHMKLHDVRKRYPCGVCDKAYDRKFQLVHHLRLHTSDTPFECEVCFLAFSDEQQLLEHSRVHTSDKPFECRYCLKGFPQKKALIVHLRMHTGERPFPCQFCERTFTQKAHLQGHMVRIHIPKKKVEYHKISDMQPATEKSGQREKLIGCDYCDKKFTYERNKTNHMKKHSGEAQYECETCQRTFPTRNNLASHLLTHVSSGSPFRCDICGREFNMKRNLIMHVKSHNNERPFECPACEKSFKLKYFLELHLTRIHPHIRFEDLPKKIPEGVNQIQKSAVSTIAPITPNKRKQSQPKKVVKVDYESDSNDMSYGEYSSESDNDMKYDSSVNTTKFVEVYIQEPKNLDAKRDDATEPKSLQINLPHDLRHVKKMLNVKSSLPAAAPEMKNISCPLCPVMVSSKAVLAIHMKEHDKNKPHQCTMCDKVYIQQASFEKHMRKHMLDGTAGNHTNTIEQDGYRLNYFPQLKSDEGYPDSGQHVKGDGRKPLECKICRKKYAQPASFEKHMRQHSELEEAKSETMVFTDNVFEKLQSLRNLKYSEGNAENEQSNEGSAPEGGFINPSDFLEVSMDHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00815273;
- 90% Identity
- iTF_00815273;
- 80% Identity
- -