Basic Information

Insect: Hydropsyche tenuis
Gene Symbol: L
Assembly: GCA_009617725.1
Location: VTON01000015.1:5693147-5698344[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.54 39 5.0 5.8 1 23 3 25 3 25 0.97

2 23 2.1e-06 0.00015 22.0 3.4 1 23 31 53 31 53 0.99

3 23 1.5e-05 0.0011 19.3 0.2 1 23 59 81 59 81 0.98

4 23 0.00011 0.0081 16.6 0.1 1 23 101 124 101 124 0.96

5 23 1.1 80 4.0 0.2 9 23 167 182 163 182 0.94

6 23 0.0042 0.31 11.6 0.0 1 23 210 233 210 233 0.93

7 23 6.6 4.8e+02 1.5 0.0 3 23 245 266 243 266 0.87

8 23 0.11 8.1 7.1 0.0 3 23 297 317 296 317 0.98

9 23 4.5e-05 0.0033 17.8 0.0 2 23 335 356 334 356 0.92

10 23 0.0002 0.015 15.7 0.2 3 23 366 387 364 387 0.94

11 23 0.016 1.2 9.7 0.1 1 23 392 415 392 415 0.92

12 23 0.65 48 4.7 0.2 1 23 422 448 422 448 0.88

13 23 0.00015 0.011 16.1 1.6 1 23 486 508 486 509 0.96

14 23 1.2 86 3.9 0.5 3 23 546 568 545 569 0.87

15 23 0.00094 0.069 13.6 2.3 2 23 582 603 581 603 0.96

16 23 0.012 0.92 10.1 0.1 1 23 613 635 613 635 0.96

17 23 0.21 15 6.3 1.3 3 23 644 664 643 664 0.96

18 23 5 3.6e+02 1.9 0.1 1 11 717 727 717 730 0.89

19 23 1.5e-05 0.0011 19.3 0.5 2 23 765 787 764 787 0.96

20 23 1.1 83 3.9 0.0 1 23 791 813 791 813 0.94

21 23 0.052 3.8 8.2 0.1 2 23 821 842 820 842 0.95

22 23 0.0025 0.18 12.3 0.0 1 23 850 872 850 872 0.97

23 23 0.11 8.1 7.1 0.8 1 23 879 901 879 901 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.54	39	5.0	5.8	1	23	3	25	3	25	0.97
2	23	2.1e-06	0.00015	22.0	3.4	1	23	31	53	31	53	0.99
3	23	1.5e-05	0.0011	19.3	0.2	1	23	59	81	59	81	0.98
4	23	0.00011	0.0081	16.6	0.1	1	23	101	124	101	124	0.96
5	23	1.1	80	4.0	0.2	9	23	167	182	163	182	0.94
6	23	0.0042	0.31	11.6	0.0	1	23	210	233	210	233	0.93
7	23	6.6	4.8e+02	1.5	0.0	3	23	245	266	243	266	0.87
8	23	0.11	8.1	7.1	0.0	3	23	297	317	296	317	0.98
9	23	4.5e-05	0.0033	17.8	0.0	2	23	335	356	334	356	0.92
10	23	0.0002	0.015	15.7	0.2	3	23	366	387	364	387	0.94
11	23	0.016	1.2	9.7	0.1	1	23	392	415	392	415	0.92
12	23	0.65	48	4.7	0.2	1	23	422	448	422	448	0.88
13	23	0.00015	0.011	16.1	1.6	1	23	486	508	486	509	0.96
14	23	1.2	86	3.9	0.5	3	23	546	568	545	569	0.87
15	23	0.00094	0.069	13.6	2.3	2	23	582	603	581	603	0.96
16	23	0.012	0.92	10.1	0.1	1	23	613	635	613	635	0.96
17	23	0.21	15	6.3	1.3	3	23	644	664	643	664	0.96
18	23	5	3.6e+02	1.9	0.1	1	11	717	727	717	730	0.89
19	23	1.5e-05	0.0011	19.3	0.5	2	23	765	787	764	787	0.96
20	23	1.1	83	3.9	0.0	1	23	791	813	791	813	0.94
21	23	0.052	3.8	8.2	0.1	2	23	821	842	820	842	0.95
22	23	0.0025	0.18	12.3	0.0	1	23	850	872	850	872	0.97
23	23	0.11	8.1	7.1	0.8	1	23	879	901	879	901	0.96

Sequence Information

Coding Sequence: ATGCCCTTCCGTTGCGAGTTCTGTTCGCGACTGTTCAAGCACAAAAGGTCGAGAGATCGTCACGTCAAGTTGCACACGGGCGATCGCAAATATCGCTGTGTTCACTGTGAAGCTGCCTTTTCCAGAAgCGACCATTTGAAGATTCACATGAAAACGCATGATAATCAGAAGCCGTTCCAGTGTACGGTTTGCAATAGGGGTTATAATACGGCTGCTGCCCTTACTTCGCATatgcaaaatcataaaagaggAGATGGTACCGTGGGTGGAAGCAATCTGACTTCTAGATCCTCCGGTGGTTATAAATGTTTGCAATGCGGCGATAGATTCCGACGTCCGGATATGTTACAgagcCACATTGCCGTTGCGCACCCTGGTGATAATCCATCTGAAGGAAGTCCTAGAGCTTCCGCAACTTTAACACCTCCGTCGCCGAGAGCACGTCATCCTCAACATCCTTTCACTCCAAAGTTGGCATGCATTTATTGCACAAGAGACTCTTTCACTACGATGGATCAACTGCAGACTCACGTCAGAGCAATGCACGGAGCTATTATGAGTGGTGAACTATCTCAGTCTCCCGCCCTAAATGGAATTCCTCCACCGTCCCCATCTCCTGCTCTTCCATATCCATGTGATATGTGTACCATGAGGTTTCCAACTCCTGTGGCCTTAGTGCAGCACGCTGCCATAGCTCATACTAAAAGAAGTCCAGGAAACTCTCCTTTGGCTTGTATGGCATGTTCAATTCCGTTTGATTCTCCAGCTGGATTGGcagaacattttttattagtgcATGGTGAGCAACTCCGTCCTACGGATCTCAGCAAGAAGGGCACAAAGAGGCCCAGAAGCAGAGACGACGCCTTAAACGCTGGAACGCTATTGTGTAATCAATGTGGCGCTGCTTTGCCTGATTTCGAATCGTTCAGAGTACATGTCAGAGCCCATTTGGATGGCGGTTCATCTATAACTCCTGGGGTTCCTGAAAGAAGTCCTTTGATCTGTCCTCAATGTGGAGCACGTTTTTCTTCATCTTCTGCTTTAGAACGGCACGCTGCAGCTCATCTGTTAGCACTTGGTTCTGAATTTGGATGCCCCAGTTGTTCAAGGGCTTTCACGAAACCTGACGAGCTTCAAAAACATCTGATGGATCTTCATGCTCATCACATTTATCGTTGCgctatttgtaaagaaatgtTCGATTCGAAAGTTGCTATACAAGTACATTTTGCTGTGAAACACAGCCACGAATGCAAAGTTTATCGATGTACTGCATGTTCATCTCCACCAGCATCGTTTCGCACAGAAACTGAATTTGCTTTACATGTACGAACTCAACATTCACAACAGCAACACGTATCTACTCCGACAGCTTTGAGATGCCTCTTTTGTCGAGCCACTTGTTCTTCGGATCTTGAAATGCAATTCCACTTGGCAGCGCACGCGGATCATTTCCGATGTCCTATATGTAGGGAGAGTTTCCAAGTTGAATTTTTACTAGATAGACACATGCAAACGCATCATGCACCACAAacTATTAATGGAAGCAGTCCGAAGCCGAAGCAAACGCTTCCCGGTCGCTTGAAAATGATGCCGTCCGAAAACAATAACGCAAAGAAAGATGGTAATAATTGTGATATTTGCGACAGAAGTGACTTTCAATCAGAAAGTGAATTAGCCGCTCATCGTAAATTAGTTCACCATATCAAAACTGGAGGAAAAAATGGAGCAGTGAGTCTCAGTTGTGCGTATTGCAGTGAAAATTGCAAATCACGTACAGAATTAGAAAACCACATGAAAAGTCATTCACAAGGAAGTGCTACCGGAGGCAAACATAAATGTCTCATTTGCGACGAAGTTTTCCCTTCAGCAGCCATTTTGGCTGAACATAAGCTGACACATTGCAAAGTAGTGGCAGGAAATAACTGCACTCATTGCAAGTCAGTGCTTTCTAATGAAGAACAATTTTTTGCCCATCTGGCTCAGCATTCAAACAACAATAATCCTCCTAGCAGTCCAAGTACTACATCACCTGTGACATTACCAACTCCGTGTGTAATATGTCGACAGACTCTTGTGACTGATTTAGAAGCTAGAATTCATGCCagatttcatttgaaaaattcaggGGCAGTTTCAGAAAACTTTCAGTGTGCACTCTGCTTAAAATCGTTTGAACTGCAAGATGTTATTCCTACGGGAAGTGAATTGAATAATGGAATACCAACGACACACGTATGTCGTAATTGCTACAGACAGCATAGTGGTATGGGACAATCTGTTGATTTGCGTTGCAATGAGTGTCACCTCAAGTTTGAATCGAATTCTGCGTTGGAAGCACATATGGATACAGTTCATAGAAAAACTTATTCATGTATAGAATGTCAAGCAGCATTTGAATCTGAAGAAGAGGTTAGAGTTCATGTCCAAGGTCATTTAGCTGGAGGTGGTTCTTTGGAATGTAGATTATGTAGACGATCATTAGCTTCCCCACTCCAACTTCAAGCTCACCTTATAGAGCACACTTTTGCTGGATGTGGAGGATTTACTTGTTATCTTTGCTCTGCAGTGTTTACAGCAGCCGCTGCTCTGCAACAGCATATGTTGGCTCACGGCTTGGCATCACGACCTTACGATTGCGCTCGATGTGGTCTCAAATTTTTCTTCAGAGCAGAACTAGATAATCATAGTTACACTCATTTGGAAGACGATGCCAGGTTAAAATTGAGTGCTGCAGAATCTTTGAAACATCCATATTTCATAAGCCAAAATGGTTTTCATGCAATGGATGCAATGTCATATTTTACAACATCACCTccaaatatgaagaaaatcaAAACTTCACAGAGCCCAAGTTTGAACTTGCAAGCCCAAACAAGACGTAGTTCTTCTTCCAAAGAGGAAGTAGCTGTTAAACAGGAAAGAGTTGCCATCAAGCAAGAAGTTGAAGATAAGGCTGATGAATACATCGAAGTTGCATCTCCACCGCCTAATCCTTCGCTTTCTCCACCATTAACATCACCGGCCGTTGTGTCTAATGACCCAGATCCAGAGAAAAAAGTTGCTGAAGAAGCAAGTACTAGTGAAACAAATGGTGATTTGGCACTTTTAAGCCCAAAAAAGGAAGTActcgaaaattaa
Protein Sequence: MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCVHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKRGDGTVGGSNLTSRSSGGYKCLQCGDRFRRPDMLQSHIAVAHPGDNPSEGSPRASATLTPPSPRARHPQHPFTPKLACIYCTRDSFTTMDQLQTHVRAMHGAIMSGELSQSPALNGIPPPSPSPALPYPCDMCTMRFPTPVALVQHAAIAHTKRSPGNSPLACMACSIPFDSPAGLAEHFLLVHGEQLRPTDLSKKGTKRPRSRDDALNAGTLLCNQCGAALPDFESFRVHVRAHLDGGSSITPGVPERSPLICPQCGARFSSSSALERHAAAHLLALGSEFGCPSCSRAFTKPDELQKHLMDLHAHHIYRCAICKEMFDSKVAIQVHFAVKHSHECKVYRCTACSSPPASFRTETEFALHVRTQHSQQQHVSTPTALRCLFCRATCSSDLEMQFHLAAHADHFRCPICRESFQVEFLLDRHMQTHHAPQTINGSSPKPKQTLPGRLKMMPSENNNAKKDGNNCDICDRSDFQSESELAAHRKLVHHIKTGGKNGAVSLSCAYCSENCKSRTELENHMKSHSQGSATGGKHKCLICDEVFPSAAILAEHKLTHCKVVAGNNCTHCKSVLSNEEQFFAHLAQHSNNNNPPSSPSTTSPVTLPTPCVICRQTLVTDLEARIHARFHLKNSGAVSENFQCALCLKSFELQDVIPTGSELNNGIPTTHVCRNCYRQHSGMGQSVDLRCNECHLKFESNSALEAHMDTVHRKTYSCIECQAAFESEEEVRVHVQGHLAGGGSLECRLCRRSLASPLQLQAHLIEHTFAGCGGFTCYLCSAVFTAAAALQQHMLAHGLASRPYDCARCGLKFFFRAELDNHSYTHLEDDARLKLSAAESLKHPYFISQNGFHAMDAMSYFTTSPPNMKKIKTSQSPSLNLQAQTRRSSSSKEEVAVKQERVAIKQEVEDKADEYIEVASPPPNPSLSPPLTSPAVVSNDPDPEKKVAEEASTSETNGDLALLSPKKEVLEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00815271; iTF_00158477;
90% Identity: iTF_00815271;
80% Identity: -