Hten007857.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hydropsyche tenuis
Gene Symbol
-
Assembly
GCA_009617725.1
Location
VTON01000004.1:54917-60997[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.0003 0.022 15.2 0.4 2 23 202 224 201 224 0.95
2 14 0.045 3.3 8.3 0.5 5 23 248 267 245 267 0.90
3 14 0.0001 0.0077 16.6 2.9 1 23 348 370 348 370 0.97
4 14 0.00041 0.03 14.8 2.6 3 23 378 398 377 398 0.98
5 14 1.4e-05 0.001 19.4 4.3 1 23 498 520 498 520 0.99
6 14 0.0016 0.11 12.9 0.8 2 23 527 548 526 548 0.96
7 14 0.00042 0.031 14.7 0.8 3 23 557 578 555 578 0.97
8 14 0.0001 0.0074 16.7 1.0 3 23 599 619 597 619 0.97
9 14 4.6e-06 0.00034 20.9 6.0 1 23 626 648 626 648 0.98
10 14 7.5e-07 5.5e-05 23.4 1.7 1 23 659 681 659 681 0.95
11 14 1.5e-06 0.00011 22.4 1.5 1 23 687 709 687 709 0.99
12 14 7.2e-09 5.3e-07 29.7 0.3 1 23 715 737 715 737 0.99
13 14 2.8e-07 2.1e-05 24.7 1.6 1 23 743 765 743 765 0.99
14 14 0.027 2 9.0 0.1 1 23 771 793 771 793 0.97

Sequence Information

Coding Sequence
atggaGCGCGTGTGTCGCACGTGTCTAGGCGAAGAAGCAGACGTTGATATTTTTGACAACTCGACGTCAACATCGACGTTTATCGACGGATCGGCTCATTCAATTTGCACGATGGTTGTCAATTGTACTCAACTCAATtattcagAAGGCGACGGTCTACCTGCGTGTATTTGCCGGAAATGTTTAGATATCGTTATAAAAGCTTTTGCATTTAAATTGCAAGCGAAAAAATCAGAAGAAGAGTTGAGAAAATGTTCGGTAAACTTTAGCAATGTTAATATACCTGAAAATTTTACCACAAAAAAAGAgGATTGCATACAATTTTCTGAAGATATTGTCATCAAAaccgaaattaaaaacattgatGATTTGGATTGTGATTTATATTGTGACAATGATATGCCTGATTGTAATCGAGACGGAGATGATTCCGATGAAGATTTGAAGCCTTTAATAGaattaagAAGTCCGAATAAAAATGtagatatgaaaatcaaaaccaaacacttaaaaaattcaGTGCCTTGCGATTTACGTGATGAATCATTTATGTCTTCAATTAGTTTAGATAATAATAAGCAGTTAACTAATTTTGATTATGTACAGTGTGATATATGTTTAaggaaatttacaaaaatgtcATATCTTACACGTCACAGAGCTGTTGCTCATTCCCTTTCAATTGACCAATGCGATGATAGTAtcgatgaaaatgttttgaatcgaaagatttcttgtattttatgcaaatctaAATTTAGCCGAGAAGATCAACTTATATCACACATAAACCTATCACATAGTACTCCTAGAAAACGAGGCCGTCCttcaaaaaaagatatattgttgaataaacagaaattgaaaagaattttAGAATCGatgaatataaaaactgaaactgaaactgaaaatgaaaatgaaaatgattattatgatgTGACAAAGAAATCAGACAAAATTCTTCATTCCATTTCTTGCACTCCTTTGATTATCGATACTAAAGTTGAAATTGATTCCGAATTAAACGAAgctgaaaactatttttgttCTGTTTGTGGAAGAACTTTTGATTCGTGTAGTTCGTTGGATAAACATACTGCGAAACATATagattaTAAACCTTCATTTTGCAAACTTTgcgataaaacttttaaatacaCTAACGTTTTAAAAGAACATTTACGAAAACATATGTCAGAATCATTCGCCGAGATTGACTTGAAATCAAAAGCTAGTTTGTTGGAAAGTCATgaaaagCTTTCTGAAAATTCTCCTGATCTCTCTgatgattttatcaaagaaGCTATTATAAACGATATCCAAgcggaaaaatatgaattttatatgggtGAAATGAAAGTGTTTTCTGAAAATGAGAACATTTCTGATTCAGAAAGCTCAACgctatataatatgataaataacgatgagatgaaatCAAATCCGAGAAGTACTAGaagaaacaatacaaaaccgacattaaaaaaatacgaatgtTCATTGTGTAATCAGTGTTTTTCAAGATCTTATTATGTGATGCGCCACATGTCTACACACAATTTTAACTATCCAGATAAATGCAATATGTGCAATAAGATATATCCCAATAAATTGTTGCTGAAAATCCATAAAGATAAGCATTGTGAGAAAAATAAAGGTTTCGGTTGTGATTTTTGTGATATGAAATATGCGAGCGAAAAGTCACTTGAAAGACATATGAATCGACGTCATAACAGTAAGTCTCTTGTTGTGAAAACAATAGCCATGAAGTTGCAAACAAATCTAATCGATTGCCCGTCTTGTGATAGACAATTTTACCGACAAGAACATTTAGATAAACATGTGAAAGTACATTTACCGAAAGAGAAAAAACATGAATGCCCCACTTGTACGAAAAGATTTCATAGAAAAGACAATTTgagAACACACATGTTGACtcacgttaaaaataaatcaaagaaaaaagtgAGTTTTCTGTGTATGTATTGTGGAAAATCTTTTGCGAATTCTTCACATCTGCTCGTTCATGTACGTAggcataaaaaagaaaatcccTTCAAATGTGACATTTGTGGAAAagGATTTCCGCGGTCTTCGGATCGTAAATATCACCGACGAACACACACTGGTGAAAAACCATACCAATGTACTATTTGTGGGAAAGGGTTTGCTCGATCCGATAAACTCGCTAGACATATGCGAATCCATACTGGCGAAAGACCTTACAAATGTACATATTGTGATCGAGCTTTTACTCAATCGAACGATTTAACTTTGCATGTCAGGAGACATACTGGAGATAAACCTTATATTTGTGGAGTGTGTGGCGATCGTTTTATTCAGggaACGGCGTTGCTCAATCATAAAAGACTTCATAGTCATCATGAATCGGTTAGCGAGAAAACTTGA
Protein Sequence
MERVCRTCLGEEADVDIFDNSTSTSTFIDGSAHSICTMVVNCTQLNYSEGDGLPACICRKCLDIVIKAFAFKLQAKKSEEELRKCSVNFSNVNIPENFTTKKEDCIQFSEDIVIKTEIKNIDDLDCDLYCDNDMPDCNRDGDDSDEDLKPLIELRSPNKNVDMKIKTKHLKNSVPCDLRDESFMSSISLDNNKQLTNFDYVQCDICLRKFTKMSYLTRHRAVAHSLSIDQCDDSIDENVLNRKISCILCKSKFSREDQLISHINLSHSTPRKRGRPSKKDILLNKQKLKRILESMNIKTETETENENENDYYDVTKKSDKILHSISCTPLIIDTKVEIDSELNEAENYFCSVCGRTFDSCSSLDKHTAKHIDYKPSFCKLCDKTFKYTNVLKEHLRKHMSESFAEIDLKSKASLLESHEKLSENSPDLSDDFIKEAIINDIQAEKYEFYMGEMKVFSENENISDSESSTLYNMINNDEMKSNPRSTRRNNTKPTLKKYECSLCNQCFSRSYYVMRHMSTHNFNYPDKCNMCNKIYPNKLLLKIHKDKHCEKNKGFGCDFCDMKYASEKSLERHMNRRHNSKSLVVKTIAMKLQTNLIDCPSCDRQFYRQEHLDKHVKVHLPKEKKHECPTCTKRFHRKDNLRTHMLTHVKNKSKKKVSFLCMYCGKSFANSSHLLVHVRRHKKENPFKCDICGKGFPRSSDRKYHRRTHTGEKPYQCTICGKGFARSDKLARHMRIHTGERPYKCTYCDRAFTQSNDLTLHVRRHTGDKPYICGVCGDRFIQGTALLNHKRLHSHHESVSEKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-