Hten014287.1
Basic Information
- Insect
- Hydropsyche tenuis
- Gene Symbol
- -
- Assembly
- GCA_009617725.1
- Location
- VTON01000015.1:3084859-3087715[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0053 0.39 11.3 4.7 2 23 165 186 164 186 0.95 2 14 8.4e-06 0.00062 20.1 1.2 2 23 193 214 192 214 0.97 3 14 3.4e-06 0.00025 21.3 0.1 1 23 220 242 220 242 0.98 4 14 1.7e-07 1.2e-05 25.4 0.8 1 23 248 270 248 270 0.98 5 14 5e-07 3.7e-05 23.9 1.4 1 23 276 298 276 298 0.98 6 14 1.5e-07 1.1e-05 25.5 0.8 1 23 304 326 304 326 0.99 7 14 7.1e-05 0.0052 17.1 3.4 1 23 332 354 332 354 0.97 8 14 4.6e-05 0.0034 17.7 1.0 1 23 360 382 360 382 0.96 9 14 4.6e-07 3.4e-05 24.0 1.7 1 23 388 410 388 410 0.98 10 14 1.6e-05 0.0012 19.2 0.3 1 23 416 438 416 438 0.95 11 14 9.9e-06 0.00073 19.8 0.3 1 23 683 705 683 705 0.98 12 14 0.0026 0.19 12.2 0.4 3 23 713 733 711 733 0.97 13 14 2.3e-06 0.00017 21.8 2.3 1 23 739 761 739 761 0.98 14 14 6.5 4.8e+02 1.5 3.9 1 23 767 789 767 789 0.87
Sequence Information
- Coding Sequence
- ATGAACGAAGACGAGGGGAATGGAGATATTGTACTTGGTCAACCGTCGTTGGATGTTAAAGACTTATTCGGAGattgtattattgtaaaaGAAGAAAATCCGTTAGAAGATGATACACGTTTGTTATCTTCACATATCAAAACATTGAGCAGTAATGAGTCAtcgagtaataaaaaattgaatgcgcGTAATAGTTTAGTATCTTCCAAAGATCCATTGAATGATATATCTACAAAAGATAATTCATCGTCGagtatagaaaataatgattcaaatGACGTCAGTCATCATAAATCAGTTTACAAAGAAATCATAAagtcgtcgaaaaaaaaaagaggcAGACCGAAAAAGAATTATAAAGAACATCATCGAAAAGAATCAGATGAtgaatttgattatgaaaaagcTTTGCAAGAAGACCGGCCCAAAAACAAAAAGGCTAAGAAACACCGAAAACATGAAAGTGGAGACGTTAAAGAACAAAAAACTTGGTCTTGCCATTGCTGTAATCGAAGTTATACTCAATTGAATGCACTCAAAacacatatgaaaatacatacagGTGAAGCTTTGCTTTCGTGTCAATAttgcgataaaaaattttcaatacaaagcAAACTTACGTCTCATGTCCGAATTCATACTGGAGAACGGCCGTATCCATGCGAAGTATGTGGGAAAAAGTTTATAGATGGCAGCACATTAGTGAAACATGTGCGAATACATACtgaagaatatttatatgaatgtaaTTACTGTGGaaagaaatttatacaaaaatctgGCTATCAAGCTCATCTGAAAATACATACTGGTGAAGACTTGTTTCCTTGTGAATTTTGTggtaaaaaattcaacaggaAGTCTTCACttgtattacatataaaaaaacatactggAGAAAATTTGTACACCTGCTCTATATGCAATAAAGTATTTCCTGTTCAGAGCAAATTGACATTGCATATGAAAACTCATTCTGGTGAAAGACCATATCAATGCAATATATGTGATAAAAGATACACTGAAAAGCATTCACTCGCTCAACATTTCAAACTTCATCTTgaggGTAAAGTTTTTACTTGTGAATTATGTGGGAAAAAATTTAGCAAAAAGATTTCCTTAGATAGGCATAACTTAATCCACAGTGGAGAAAAGCCATTTTCATGTGAGACATGCGGAAAGAAATTCACTCAGAAAAGTCAGATGCAAGCGCATGCTAAAACACATACTGGAGTGAAAccttttttgtgtgatttttgtgGGAAGGCTTTTCAAAGGAAAGATGCCCTTGTCGCTCATAGAAAAATTCATACTTTCAGTGGGTTACTTAATGCAGACAATAATGTTTTAGAACGTTCTGGTGCAAGGCCAATAATTATTGGATTAGATGGCCGTCCAATCAAACCAGTAATTACTGAACCCGTTGAAACTGTATGTGATAGTGaactaaacaataaaataattgatccTGGGGACAAACAACTGTCTAAAACAAACGCtgcaaataattcaaaaaaaattggtctTGCTAATCCATCATCAATAAAGGCTGaagaagaaattattaaaacaatagaCAAAAGCGCTTTTAGTATAGTAATAGATTATGATACTAGAGATTGTGAAGATTATGATCCAGATAATGATATTCAACTGAACGATATGCCTCCAAGTCCATCTGATTCAACATCATCGTCGTCATCGTCTTCTTCCTCTTCTTCTTCTTCCGAAGACGATTCTTCATCCAATTCTTCTGAAAGTGATTCAGaaattgataatgataatgttgATACTCATTCTGATGTTGGAGTTGAAcatattctaattaaaaatgaagactcagttgaacaaaaaaataattcagattCACCATTGAAATTGGAAATAATCGATCATAATTATTCTGTGAAAAAATCtggaaaagtaaaaaatgccagtaacaaaaaatcTAATCCTAGCGAGGATAGAAACagcgtaaaaaataatttggaaaaaattaaaaaatcaaaagaatcCAGTAACTTTACAGACTTATTCAATAAATTTCCATGCCctttatgtaataaaacgtATGCCAAAAAAAGTGGATTATCAATGCATTTGAGACTGCATACTGGAGAAAATGTGATAGCGTGCAACCATTGTCCTAAGCTATTTGCAGCTCCTAGTAAATATTTGTCTCATGTCAAAACTCATACTGGAGAGAAACCATATGTTTGCGACATCTGTGATAAAAGATTCACAGAAAAACATTCATTACTAACACACTATAGAATACACGTCGGTGATAAACCTTACGAATGCTccacgtgtaaaaaaagGGATTCATTGCAGACTCACAACAAGATTCATACTTTGAAACACTTATTGGCaaatgaaatgtataaaattggTGGAGGGGCCACTGTTAGAGATCGGCCTTTGATAGCTTTGTCAAAAGATGCTGATGAATAA
- Protein Sequence
- MNEDEGNGDIVLGQPSLDVKDLFGDCIIVKEENPLEDDTRLLSSHIKTLSSNESSSNKKLNARNSLVSSKDPLNDISTKDNSSSSIENNDSNDVSHHKSVYKEIIKSSKKKRGRPKKNYKEHHRKESDDEFDYEKALQEDRPKNKKAKKHRKHESGDVKEQKTWSCHCCNRSYTQLNALKTHMKIHTGEALLSCQYCDKKFSIQSKLTSHVRIHTGERPYPCEVCGKKFIDGSTLVKHVRIHTEEYLYECNYCGKKFIQKSGYQAHLKIHTGEDLFPCEFCGKKFNRKSSLVLHIKKHTGENLYTCSICNKVFPVQSKLTLHMKTHSGERPYQCNICDKRYTEKHSLAQHFKLHLEGKVFTCELCGKKFSKKISLDRHNLIHSGEKPFSCETCGKKFTQKSQMQAHAKTHTGVKPFLCDFCGKAFQRKDALVAHRKIHTFSGLLNADNNVLERSGARPIIIGLDGRPIKPVITEPVETVCDSELNNKIIDPGDKQLSKTNAANNSKKIGLANPSSIKAEEEIIKTIDKSAFSIVIDYDTRDCEDYDPDNDIQLNDMPPSPSDSTSSSSSSSSSSSSSEDDSSSNSSESDSEIDNDNVDTHSDVGVEHILIKNEDSVEQKNNSDSPLKLEIIDHNYSVKKSGKVKNASNKKSNPSEDRNSVKNNLEKIKKSKESSNFTDLFNKFPCPLCNKTYAKKSGLSMHLRLHTGENVIACNHCPKLFAAPSKYLSHVKTHTGEKPYVCDICDKRFTEKHSLLTHYRIHVGDKPYECSTCKKRDSLQTHNKIHTLKHLLANEMYKIGGGATVRDRPLIALSKDADE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -