Hten014666.1
Basic Information
- Insect
- Hydropsyche tenuis
- Gene Symbol
- -
- Assembly
- GCA_009617725.1
- Location
- VTON01000086.1:319590-325331[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.91 67 4.2 0.4 2 23 42 62 41 62 0.91 2 30 2e-06 0.00015 22.0 1.0 1 23 68 91 68 91 0.96 3 30 0.084 6.1 7.5 3.0 1 23 97 119 97 119 0.98 4 30 7.5e-06 0.00055 20.2 0.2 1 23 125 147 125 147 0.98 5 30 0.00017 0.012 16.0 4.0 1 23 153 175 153 175 0.98 6 30 0.0073 0.53 10.8 2.2 1 23 376 398 376 398 0.97 7 30 2.6e-05 0.0019 18.5 0.5 1 23 404 427 404 427 0.96 8 30 0.00032 0.024 15.1 0.2 1 23 479 501 479 501 0.98 9 30 2.7e-06 0.0002 21.6 0.7 1 23 507 530 507 530 0.97 10 30 1.5e-05 0.0011 19.3 0.4 1 23 536 558 536 558 0.98 11 30 1e-05 0.00074 19.8 7.5 1 23 564 586 564 586 0.97 12 30 0.0018 0.13 12.7 2.3 1 23 592 614 592 614 0.98 13 30 0.00012 0.0085 16.5 0.1 1 23 620 642 620 642 0.97 14 30 0.00059 0.043 14.3 9.6 1 23 648 671 648 671 0.95 15 30 0.045 3.3 8.3 0.2 1 23 734 757 734 757 0.97 16 30 0.018 1.3 9.6 6.3 1 23 793 815 793 815 0.97 17 30 0.00053 0.039 14.4 2.2 1 23 821 844 821 844 0.95 18 30 0.00013 0.0094 16.4 0.2 1 23 895 917 895 917 0.98 19 30 1.2e-06 8.7e-05 22.8 1.9 1 23 923 946 923 946 0.97 20 30 1.1e-05 0.00082 19.7 3.0 1 23 952 974 952 974 0.98 21 30 2.3e-05 0.0017 18.7 3.6 1 23 980 1002 980 1002 0.96 22 30 0.0057 0.42 11.2 1.1 1 23 1008 1030 1008 1030 0.96 23 30 7.9 5.8e+02 1.3 0.2 2 23 1079 1101 1078 1101 0.90 24 30 4.8 3.5e+02 1.9 0.6 1 23 1106 1127 1106 1127 0.85 25 30 0.019 1.4 9.5 2.2 2 23 1240 1262 1240 1262 0.94 26 30 2.1e-05 0.0015 18.8 0.4 1 23 1268 1290 1268 1290 0.97 27 30 0.011 0.79 10.3 0.5 1 23 1296 1319 1296 1319 0.95 28 30 0.0011 0.083 13.4 1.8 1 23 1325 1347 1325 1347 0.97 29 30 3e-05 0.0022 18.3 4.3 1 23 1353 1375 1353 1375 0.97 30 30 0.00016 0.011 16.1 4.5 1 23 1381 1404 1381 1404 0.96
Sequence Information
- Coding Sequence
- atggttcaaaatttttctaactCGACTAACTTCTTGAGTTTCGATGGTAAAAGCAACGATTCTGATTCCATACAAGTTCTCGAAACACCTTTGATCACAAATGATAGTATAATCAAAACtgtcgtttgcgaaatttgcACCAATAACATAACATGGAAGTCTTACAAACGCCATCTTCAATCCCACAAGAATGAAAGACACTATATTTGTCATCAGTGCGGGAAAGGATTTAAAAACTCCGGTGCGCTCTCACGACACACTAGGGAAGTTCATAGTCGCTTGCTTCGTTTCACATGTGATATATGCAATGCTTCGTTCACTTGTAAACGTACTATGGAGGAACACAAACTTACACATAGTAGTAATCGCTCGTATGTCTGCGATAGATGTGGAAAAGGGTTTCGCTTGCAATCATCTTTGAATATCCACGTGAAAGTTCATTTGAATCTTTTCCCATTCAAGTGCACCGTATGTTCTCAAAAGTTCAAAAGAAAACAGGAGTTGCATTCTCACATTTCTATACATACTGGTGAAAAACCGTCTTCAAGTTGCCCCTCAGTTTGTGTAATTCAAGCTCGAGACGATATTCAACATTCTCCCCGACATGGGTTCGTCTCTACTTGCGATGACAAAGCCTCAATCTTTGATTGTCAAACCACTTCTAGCAATATTGATAGATTATCGCACGACATTCCTCAAATTTGTGATGACATTAAAATCAAAGTTGAAGATAGTTCTATTTTCGAGCccagtattcaaatttttagttCCGATTCAAATTCAcctaaacaaattatttacaatgattacgaggaaaaaaatagcataaaGTCAGATTACTCGAACAGAATTAACTCAGATTATGAGTCTGAAAATGATGCACATCTTTCAAATTCTGAATCTACTAATAATGATTGTAATGAAAAAGAGACCTATATGGATATCTCAAAGTCTGGTGATCAGTGTAATTTTGtaaagggaaaaaaagaaacTGTCAGTGAGCATACTGCAAAAATAGATAATTGTACAAGTACATCATTTGAAGGAAATAACCAACGTATTCCTGACACATACACTAAACAAGATCCCGAAAAATCAAAAGTGATTATTAACGGAAAAACACATTATCATTGTCTCGTATGCAAAGAGAATTTCAGCAGtgcatataaatttgtttctcACCAATCGATTCATTTGACTCCAAAGAATTTTGCATGTAAAATATGTGGTAGAAAATTTAAAGTCCTTCAATCTTTGAAAATTCACTTGAAAGTATTACATTCAATGAAAGATGAACAAGATTATCTCGAATTTCAAAACTCTTATAAGCCGACAAATAAAAAGATAGACGTTGCACAATTGAATGTTGAGGGAAGTGGAACTAATAACGAAGCTCCAAATATTACTAAAGTTGTTGTTGACAATCGAACATACTATGAATGTCAAATTTGCCGCAAAAAACTGAATAGACCCTCTGCTTATGCCGACCATATGTCTATACATActggggaaaaaaaatatgtttgtgacGAGTGTGGGAAATCGTTCAGGTTAAATACAACTTTGAGAACCCATATAAAACTCTCACATCAAggcatcaaaaaattttcttgtgaTGTATGCGATAAGAAATTTGGtactaatattaatttgatagaaCACAAACGAATTCATACTGGTGAAAGACCTCACGTATGTGCGAAATGCGGTAAAAGTTTCAAACACAAATCTTGTCTCAACTCACACATTAGATCACATACTGATAATTTCCCCTTTCAATGTACTCAATGTAAAGCAAGATTTAGAATTCAGTCTAGGTTGAATTATCATATGATAAAACATACTGGCGAAAGACCGTATATGTGCGATATTTGCGATCAGTCTTTTGCTATCAAAGCTCTTTTAAATcgtcataaaataattcatactaATGAAAGGCCTCATACCTGTAATATTTGTACGAAAACTTTCCGTCACAAaagaaatttacaaaatcatgaaaaaaattgtcacaATTCTAATTCTTCTAAACAAACTACTTATAACGATCACGAGGAAAAAAACAGTGTGGTATCAGATTATTCCAACAGAAATAATTCAGATTATGAATCTGAAGATGATGCACCTCTTTCTAAACTTAAATCTACTAATGATTGTGATGAAAAAGGGACAGATATAGATATATTGAAATCTGCAAAGTATTCTTGTGATTTATGTGATTTTgtgactgaaaataaaactgttcTAAGTGAACATATCGAAAAAGaacattattttacaaatacacTTGTCGAAGGAAAAAACCTACGTATATCAGACACGTACCCTAAACAAGATCTAGAAAaatcaaaagtgaaaattaacgGGAAAACACTTTACCATTGCCACGTGTGCAACAAGAATTTACGTAGTGCACATAATTTTGTGTCTCATCAAACAATTCATTCtggtcaaaaaaattttacatgtgAAATATGCGGTAGAAAGTTTAGGCTtcttagatttttaaaaaatcacttgAAATTTCTGCATTCAATGAAAGACGAACAAGACTATCACGAATTTCAAAACTCTTACAATAATTCGACGAATATAAACAAGGATATTGCACAAATTAAAGGGAGTTATCTTAATTATAAAGCTTTATACGAAGCTAAAATTGTTGTTAACGATCGAACGTACTATGTATGCCCAATTTGCGGTAAAAAATTGAGTAGAGTCAATTATTATGTTACCCATATGTCGATACATActggagaaaaaaaatacgtttgcCACGTTTGTGGAAAATCTTTCAGGCTAAAGTCATTCTTGCAAGTTCATATACGACTTACACACAAaggcattaaaaaattctcgtGTCATGTTTGCCATCAGAAATTCGGTACTAGCGCTAATTTGACGGAACACATACGAATTCATACCGGTGAAAGACCTCATATATGTGCAAAATGTGGTAAaagattcaaacaaaaatctagtctttttattcataatagaTCGCACACTGACCATTTTCCTTTTCAATGTATTCAATGTAATGCGAGATTTAGAATACAATCTCagttaaattatcatatgatTAAACATACAGGTGAAAGACCATATTTACCTGATATAAACAATTCCACAGCCGATCAGATAGAAGACAACAAGAACATATTTGTGGCACACAATACGCTCGGATTAATAAAAGTGAATGttgacaaaaaatatcttcCCGATAATTGTACTAAATGTGCATTTTGCGACTCGCCGTTCAACGAAATCAATGTACTTTTATCCCACATGTTAGATTTCCAcccagattatttttttcattgcgaTGTTTGTGGTTCTTACGTTGATCGTAGTCAACTTATTCCGCACATGTCGCAACACGCTGACGAAGAAGATAAAATGgacgaaaacaatttaatggAAGATACTCAAACAAACGTGattaattctttaaaaaaaaatcctcccAAAGAAAAGAATGTAAAAAAGTCTGGAAACAGTCAAGACATGGAAGAAAACGATGCGTTTTCCAACTCAAGTCATTCGAACGATCGCTTTGGACCAATACCGGATTCTGTCTTCGAAGCTATCAAAGACACTGAAGAAACACCCGCAGAACCAATGCCAAAAACTCTGGAACAAAGTTGCGAAGACATGAAAGAAATGTCAGAAAAACTATCATCTCGTAACGTGAATTCGACTGAAACAAATTCAAGAGTCTGTCCTATTTGTTCAAAAGTGTTCAGAGTGATCTCCAGTTACCATTATCACGTGAAACATTTCCACGGAGGTGTAAAAGAGCACGTATGCAACGTATGTGGAAGAAGTTTCGGAGTAAAGAGTGCGTTAACGAGTCATCTCACAGTTCATTCCGGCGAAAAACCTTATTCTTGTCCGGCATGTTCGAAACAATTCCGATCCAAAGCTAGCATATACATTCATTACAATAATGTTCATTGCGAGAGGAAAACATTCGCTTGCACTATGTGCAACAGATCGTTCAAATGGAAACAAAAGCTTATGCGCCATATATCTAGTCATACTAAAGAAAAGAAGCATATATGTCCTAAATGCAATCGAGGATTTACGGTTAAGTGCGATCTCACTAGACATATTAAGACTCATGACAGTGCCAAACCATTTTATTGCGATAAATGTGGAATGTCTTTCCGCCAAAGACGATATTTAAAACAgcattcaaagaaaaaacattCTGTGACGActtaa
- Protein Sequence
- MVQNFSNSTNFLSFDGKSNDSDSIQVLETPLITNDSIIKTVVCEICTNNITWKSYKRHLQSHKNERHYICHQCGKGFKNSGALSRHTREVHSRLLRFTCDICNASFTCKRTMEEHKLTHSSNRSYVCDRCGKGFRLQSSLNIHVKVHLNLFPFKCTVCSQKFKRKQELHSHISIHTGEKPSSSCPSVCVIQARDDIQHSPRHGFVSTCDDKASIFDCQTTSSNIDRLSHDIPQICDDIKIKVEDSSIFEPSIQIFSSDSNSPKQIIYNDYEEKNSIKSDYSNRINSDYESENDAHLSNSESTNNDCNEKETYMDISKSGDQCNFVKGKKETVSEHTAKIDNCTSTSFEGNNQRIPDTYTKQDPEKSKVIINGKTHYHCLVCKENFSSAYKFVSHQSIHLTPKNFACKICGRKFKVLQSLKIHLKVLHSMKDEQDYLEFQNSYKPTNKKIDVAQLNVEGSGTNNEAPNITKVVVDNRTYYECQICRKKLNRPSAYADHMSIHTGEKKYVCDECGKSFRLNTTLRTHIKLSHQGIKKFSCDVCDKKFGTNINLIEHKRIHTGERPHVCAKCGKSFKHKSCLNSHIRSHTDNFPFQCTQCKARFRIQSRLNYHMIKHTGERPYMCDICDQSFAIKALLNRHKIIHTNERPHTCNICTKTFRHKRNLQNHEKNCHNSNSSKQTTYNDHEEKNSVVSDYSNRNNSDYESEDDAPLSKLKSTNDCDEKGTDIDILKSAKYSCDLCDFVTENKTVLSEHIEKEHYFTNTLVEGKNLRISDTYPKQDLEKSKVKINGKTLYHCHVCNKNLRSAHNFVSHQTIHSGQKNFTCEICGRKFRLLRFLKNHLKFLHSMKDEQDYHEFQNSYNNSTNINKDIAQIKGSYLNYKALYEAKIVVNDRTYYVCPICGKKLSRVNYYVTHMSIHTGEKKYVCHVCGKSFRLKSFLQVHIRLTHKGIKKFSCHVCHQKFGTSANLTEHIRIHTGERPHICAKCGKRFKQKSSLFIHNRSHTDHFPFQCIQCNARFRIQSQLNYHMIKHTGERPYLPDINNSTADQIEDNKNIFVAHNTLGLIKVNVDKKYLPDNCTKCAFCDSPFNEINVLLSHMLDFHPDYFFHCDVCGSYVDRSQLIPHMSQHADEEDKMDENNLMEDTQTNVINSLKKNPPKEKNVKKSGNSQDMEENDAFSNSSHSNDRFGPIPDSVFEAIKDTEETPAEPMPKTLEQSCEDMKEMSEKLSSRNVNSTETNSRVCPICSKVFRVISSYHYHVKHFHGGVKEHVCNVCGRSFGVKSALTSHLTVHSGEKPYSCPACSKQFRSKASIYIHYNNVHCERKTFACTMCNRSFKWKQKLMRHISSHTKEKKHICPKCNRGFTVKCDLTRHIKTHDSAKPFYCDKCGMSFRQRRYLKQHSKKKHSVTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -