Hten016916.1
Basic Information
- Insect
- Hydropsyche tenuis
- Gene Symbol
- -
- Assembly
- GCA_009617725.1
- Location
- VTON01000018.1:1927788-1931017[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-11 1.6e-08 34.1 0.0 2 34 14 46 13 53 0.90 2 2 0.89 8.3e+02 -0.2 0.0 12 26 132 146 129 146 0.80
Sequence Information
- Coding Sequence
- ATGCCTCGTTGTGTGAAGagatcttttaaaaattattctgaaCAGGCTATGAAAAAAGCTATTGAAGATGTTCAGTTGCACAAAACATCCTTGAGGAAAGCTGCACGAGTATTCGGAGTGCCAAGAGCAACTCTCAAATCAAAATTGGATGGCAAATCACCCATAGAAAGTAAGATGGGACCGCaaccaattttaaataacgcAGAAGAGGATAAAATATGTCACTGGATAATGAAAATGTCTGCAGCTGGTTTTTCCGTTTCTGACGACGAACTTACAACTAGTGTACAACGCTACATCGTAGAAATGAAACGTAAAAAcccatttaaaaatgatttcccTGGTAGAACATGGATAAAGTGTTTTTTACACAGAAACcctacaatatcaaaaatagttTCCCAAAACTTAACTATCTCACGAGCAGCAGTTACTTATACTAATATACAGGACTGGTTTTctaaagtaaataattatttagagGAAAACAACATTCGCCAAATTTTAGATGACCCATCAAGGATTTTTAATTGCGATGAAACAGCATTCTTCCTCAATCTCAGAGGCAATAAAGTGCTAGCAAAAAGAAGTACTGAAGCTGTTTATCAAAAAGTGaatgtaaacaaaaaagaatatataacAGTTTCGATAACAAGTAGTGCCAGTGGTTCAGTTGCACCCCCAACAGTggtattcaaacaaaaaagtatACCCCATGAAATAGTCAATATTTATCCGAAAGAATGGGGATTAGGAAAAAGCGATTCTGGGTGGATGACGAGTGAagctttttttgaatttgttgctaatttattttatccgTGGTTGATAAAAACACAGGTCACATTACCCGTAATTCTTTTTATGGATGGAAATACTTCACATTTAAGCTTGCAAACAAGCCAGTTTTGTGAGAGTCATGGTATTGTTTTAGTGGCATTCTATCCCAATGCAACCCACCTACTGCAACCTATGGATGTTTCCGTTTTCAGAATCCTCAAAGAAGCctggagaaaaaaaattcatgaatggAGGATCAAGACTGGTAAAACTCTAATATTGAAGGAAAAGGATTTCCCAAAATTACTGAAAGAAGTGATTGAAGAAACAATAACTAAACCTGTTCTGCGTAATGGATTCCAAAAATGTGGCTTATATCCGTGGAATCCACAAGCagttgaaatatcaaaacagcaaactaaaattgaaatgagtaAAGAAGCACGAGAGACACaaatccattatttaaaacaaggCCTTAATTTCTTGTGCGACAATATTGACTTGGAAAAACTTAACGACTTTAGATCCTCAACAGAAATATGGAATGGGGCAGTAGAAGATAcaactttatttaaattatgggaaaaaacccatattgaattaaacaaattaaccATTCCGTTCGATGAATCTTTAAGTACAgaagttttattttccaataataatgTTAATGCTGAAGAATTTTCAAAGGACAATACTATTTCTGCAGTGtcgttttcagaaaaaaatgacgTTGACATATTTTCAAGTCGTGATGCTGATGATGAAATtctacaaatttcaaaaaagGTACAGATACCAATTGTTTTAGAGAAAATACAGATTATCTTATCTGATGAATCGTGA
- Protein Sequence
- MPRCVKRSFKNYSEQAMKKAIEDVQLHKTSLRKAARVFGVPRATLKSKLDGKSPIESKMGPQPILNNAEEDKICHWIMKMSAAGFSVSDDELTTSVQRYIVEMKRKNPFKNDFPGRTWIKCFLHRNPTISKIVSQNLTISRAAVTYTNIQDWFSKVNNYLEENNIRQILDDPSRIFNCDETAFFLNLRGNKVLAKRSTEAVYQKVNVNKKEYITVSITSSASGSVAPPTVVFKQKSIPHEIVNIYPKEWGLGKSDSGWMTSEAFFEFVANLFYPWLIKTQVTLPVILFMDGNTSHLSLQTSQFCESHGIVLVAFYPNATHLLQPMDVSVFRILKEAWRKKIHEWRIKTGKTLILKEKDFPKLLKEVIEETITKPVLRNGFQKCGLYPWNPQAVEISKQQTKIEMSKEARETQIHYLKQGLNFLCDNIDLEKLNDFRSSTEIWNGAVEDTTLFKLWEKTHIELNKLTIPFDESLSTEVLFSNNNVNAEEFSKDNTISAVSFSEKNDVDIFSSRDADDEILQISKKVQIPIVLEKIQIILSDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -