Hbet001046.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hydropsyche betteni
Gene Symbol
ush
Assembly
GCA_028571205.2
Location
JAOXNN020000004.1:8455025-8458017[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.001 1.4 13.4 0.1 1 20 118 137 118 139 0.94
2 9 0.00011 0.15 16.4 3.1 1 23 186 208 186 208 0.99
3 9 0.019 26 9.4 1.0 3 21 244 262 243 263 0.92
4 9 0.031 42 8.8 3.0 2 21 566 585 565 586 0.94
5 9 0.0026 3.4 12.2 0.0 3 20 629 646 627 648 0.91
6 9 0.26 3.4e+02 5.9 0.2 2 23 693 714 692 714 0.95
7 9 0.009 12 10.5 1.4 1 23 720 742 720 742 0.99
8 9 0.069 91 7.7 1.9 1 23 796 819 796 819 0.94
9 9 0.04 54 8.4 1.2 2 21 920 939 919 940 0.93

Sequence Information

Coding Sequence
ATGAGTGTTTTTTTGCTTCCAGGCGAAGATGAGGAATGGGTGAATGAAGGCGGGGCAGAAGCTATGGCAGCAGAAGTCCCAGGTAGTCCGCCGTTGCCTCGCCTTCGTCTCAACACGAGTTTGGCGACGGACCCAGCCACCAGAGCAGCCTCCGCCCCGACGCCTACGCCCCCGCCAGcccccgtcgccgccgctgaGTACATGGCGACTCTGCCCCAGGCTTTGCAGTCGGCCTTCGCCGCTGGACTGTTCCCCTTGCCGTTCCCGGTGGAGTCGCAAACGCCGCCTTCGACTGCTCGATCACCCTCCGTGCCTCTCGAGGTGGCTCAAAGGCAACTCACACAACCGTTGTACATGTGCTCGCCGTGCGGCATCAAGTTCTCCTCACCCAGCACGCTAGAAGCTCATCAGACCTATTATTGCTCGCATAGAGTTACCAAACCGACGACTGACGGCGAAGACGGTAAAGCATCGAATACGGACGCCTCTAGTGCCAATGCTCAAGAAGACTCTAGCGCCGAAGGGCCCAACAAAGCTCTGAAAACAGGGAAACAGTATACATGCTCGCATTGCTCTTACAGTGCTGACAAAAAAGTCAGTCTGAATAGACATATGAGGATGCATTCGGTTTCACCCAGTCCACCTTCGCTGCCTGGTTCGACCATTTCGAACGGAGATACGAATCCAGATCTCTCATCGCCGCCGATCCAACTTATCCCTGATCGATATTGTGCCGACTGCGATATTAGATTCAGTTCGACTAAAACGTTCAGAGCtcataaaatgcattattgCAGCACGAGGCAGGTTGTTAAgtcaaataacaataattcaacGACGTCAGCAACGTCAACGGTAGCCCCGAAGAGTGGATCGTCTTGTACGTCAGGTTCAGCTCCTCCATCTCCTAACGACGCTTGCAAGTCACCTTCGTCTCCTACGACAaccgtcaataataatcaacaacCTCTATTAGCTCTACCTACAAATCCTATTTTAATAGTGCCATATTCTTTATTCAGAGGAGCCAGCGTGTTATCCGGTTCTACTGTTCCTGGTCTTCCAAATCCCGATACGCCATGTTTCTTAATGCCCAACGGTACTATACAGCCAATGACTCAAGCTTTTCCCGGAGTCATAAGACCATCGTTACCCTCCACTCCTTCAGAAGTATTGAAAGCAGCGAACAAGCCGCGTGAACCTCAAATTAGTAAAGATCCTTCAATACCTTTAGACTTGAGCGTGCGGAGAACTCCGGAAAATAAGGATAGTTTAGATGACCAAGAAAAGGAAAATCGACTTCAACAATCTATCACCCCTGAACAAATTGTATGTGCACCATCTTTACCAGGATCACCACCATTGACGCCGTCTCCGAAACAAAGTAGTTCTCCGAATTCTAACGGATCGCCAAAACGTAAATATCAAGAATCTCGCAGTAATAGCCCTAAACAAACTACTTTAACACCTAAATCCAATTCGGATGAAAGCATACAGCTGAGTCCTAAATGCAAAACACCTATTCTTATGACTAATCCCATGATGCCGTTTCCAGTCTCGGTCACAGCTGCTCTTCACCCCATTCTATTACGATCCGGTAGTTCGATTATATCGCAAGATAACATAGCACTGAGACTCGCTGAACTTCCCGGGCTACAAGCATCTCCACAAGTTTTAGTCAAGCAAGGAGTGTCAAAGTGTAAAGAATGCAACATAGTCTTTTGCAAATATGAAAACTATGTAGCACATAAAAAACACTATTGCTCAGCTAGAGGAAACCAAGAAGATGGAGATGGATCCAAGTCTACAGGAAGTCCACCAGTCAGCCCCAATAATAACTCAACTGGAAAGACAAGTCCAGTGGCACAATATCAACAGCTAATTTGCGCCGCCTGTGGAATCAAATTTACATCTTTAGACAATTTGACCGCTCACCAGTCGTATTACTGTCTGAAAAGATCTGAAATACAAGTGAACAATTTAGATACTGATTTGAGGAAATGTCCCAAATGCAAGAATGTTCTTGAACCTGGACATGTATGTAGCAATTCTGTGGGAGCAGAAGGTGGAGGATGGAGATGTCCCTGCTGCAATGTAGTTAGTGCTACGGCTAGTGCTGCTCAAAGGCATATGGATTCCCATGGAGGAGTCAAGGCGTTTCGGTGCACCATTTGCCGTTACAAAGGCAACACACTGAGAGGAATGAGAACCCACATAAGAATGCATTTCCCGAAACGAGCAGCTGATTTGCAAGAAGAAAATTACATAACATGCATTCTAGAAGATGATACGCGACAAGAGGTACCTAATGCTGCACCAGGAACACCTGTTTTAGCTCCACCACCAGTCCCTTCTCCAAACCCAGAACAACGTCCAGACAGACTGCACTACTGTGATTCTTGTAACTATAGTTCAACATATAAAGGAAATGTCGTCCGTCATAATCGATTAGTTCATAGCGGTTCAGGAATCAAGTCTCCGGGTCAATCTCTTGTCGGCGAAGGTGAAGAGTCTTTAGTGTTGAACGGCAACGAGACATCTATCAGCAAAACAACCGTCATTGACGACGACGAACCTCGTCCAAATATTATCGTAAAGCAAGAAATACAAGATTGTGATATTGACGTCACCAACACTgacgaagaattgaaaaaagaaatcatcgATACGAAAGACATTAAACAAGAAACTAATAGCAGGGATACTCCTGAAGTCGATGGTGACCCCGACTTGATAGAGGCTAAAATTGGACCTAAATATTGCAAATCGtgtgatatttcattcaaatacatGTCAACGTTCATGGCTCACAAAAAATTCTACTGCTCTAGCCACGCAGGAGAAAACGTCAACAATGCCGGAAATAATAATCTGACTGCTAGAGCTACCGAAGCttctgttttgtaa
Protein Sequence
MSVFLLPGEDEEWVNEGGAEAMAAEVPGSPPLPRLRLNTSLATDPATRAASAPTPTPPPAPVAAAEYMATLPQALQSAFAAGLFPLPFPVESQTPPSTARSPSVPLEVAQRQLTQPLYMCSPCGIKFSSPSTLEAHQTYYCSHRVTKPTTDGEDGKASNTDASSANAQEDSSAEGPNKALKTGKQYTCSHCSYSADKKVSLNRHMRMHSVSPSPPSLPGSTISNGDTNPDLSSPPIQLIPDRYCADCDIRFSSTKTFRAHKMHYCSTRQVVKSNNNNSTTSATSTVAPKSGSSCTSGSAPPSPNDACKSPSSPTTTVNNNQQPLLALPTNPILIVPYSLFRGASVLSGSTVPGLPNPDTPCFLMPNGTIQPMTQAFPGVIRPSLPSTPSEVLKAANKPREPQISKDPSIPLDLSVRRTPENKDSLDDQEKENRLQQSITPEQIVCAPSLPGSPPLTPSPKQSSSPNSNGSPKRKYQESRSNSPKQTTLTPKSNSDESIQLSPKCKTPILMTNPMMPFPVSVTAALHPILLRSGSSIISQDNIALRLAELPGLQASPQVLVKQGVSKCKECNIVFCKYENYVAHKKHYCSARGNQEDGDGSKSTGSPPVSPNNNSTGKTSPVAQYQQLICAACGIKFTSLDNLTAHQSYYCLKRSEIQVNNLDTDLRKCPKCKNVLEPGHVCSNSVGAEGGGWRCPCCNVVSATASAAQRHMDSHGGVKAFRCTICRYKGNTLRGMRTHIRMHFPKRAADLQEENYITCILEDDTRQEVPNAAPGTPVLAPPPVPSPNPEQRPDRLHYCDSCNYSSTYKGNVVRHNRLVHSGSGIKSPGQSLVGEGEESLVLNGNETSISKTTVIDDDEPRPNIIVKQEIQDCDIDVTNTDEELKKEIIDTKDIKQETNSRDTPEVDGDPDLIEAKIGPKYCKSCDISFKYMSTFMAHKKFYCSSHAGENVNNAGNNNLTARATEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00158708;
90% Identity
iTF_00816137;
80% Identity
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