Hbet007871.1
Basic Information
- Insect
- Hydropsyche betteni
- Gene Symbol
- -
- Assembly
- GCA_028571205.2
- Location
- JAOXNN020000044.1:230981-234454[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00015 0.2 16.1 0.4 1 23 133 156 133 156 0.95 2 10 0.025 33 9.1 4.5 2 23 265 287 265 287 0.91 3 10 0.13 1.7e+02 6.9 0.3 2 23 607 629 606 629 0.92 4 10 0.00014 0.18 16.2 0.3 3 23 661 682 660 682 0.94 5 10 0.0074 9.9 10.7 3.6 2 23 722 744 721 744 0.96 6 10 0.11 1.4e+02 7.1 3.7 3 23 759 780 757 780 0.92 7 10 5.5e-05 0.073 17.4 0.6 2 23 831 853 831 853 0.95 8 10 0.088 1.2e+02 7.3 0.9 1 23 934 956 934 956 0.97 9 10 3.6e-05 0.048 18.0 0.0 3 23 966 987 965 987 0.98 10 10 0.28 3.7e+02 5.8 2.7 1 23 1039 1062 1039 1062 0.96
Sequence Information
- Coding Sequence
- ATGTCCTCGGGGGCCAAGAGGCCGCCCGCGGAGGCGTCGGCCTTCGCCCCCGGCGGCACCTCCCCCTGCAAGCCGAAGCGGCGCAAACAGTCCACGCCGGTGCGCATTTCCGGGGAGCACCCGGGCGCCGGGCCAgagccgccgccgttgccccaGTCGCCCCCCAGTCCGTCGGCGGagcaccttgccgccggcggcagccCCCAACACCAGCAGTTCGCCGCGTACGACAGGTACGTCGAGCCCGGCTACGGCAACAACCACCAGCACGAGTTCTACCAAAAGTGCGAGGCGacgggcgacggcgacgacaacgACAAGTTGAGCGTGATGAAGAATGAACACGAGGCCGCCGAGCCTCTTCACCACCAACAGCAGCAGGACGTTGCTTACTCGCACCCGTGCCCCAAGTGCGGCCTGATGTTCCCCAACGCGGAGCTGCTGAGGCTGCACCACGAGAGCGAGCACTACGAGAGGAACGGTAAGGATCTCGTCGAGTGCAAGACGGAGCCGCCGTTCGACGCCGAAGACCAGAACGGCAGCCCCAACATGGGCAACTCGACGCACAATCCCGGCTCCGTTCCCGATCCTAGGATGGAAGCTTGGAGCGCCGAGTTCCAGGCCAAGATGGCCGATCTTTACAAAAACGCATTGTCTTTTCCACACGACGTGCCCAAGGAGTCCGTTCCGCCCAATTTCAACCCCCTCTGTCCGCCTTTCCCCCTATTTTCATCTGCGGTGCCGCCGCAGAGGCCGCTCATGGAACCAATTAGAATATTCAATCCGGAAGCGTACTGCGAACTGTGCAGTAAAGAGTTTTGCAACAAGTACTTCCTGAAAACGCACAAGGCGAACAAGCACGGCATCTACGAGAGCGCTCCGGCCAACAGCAACGCGGAGGGCCTCAATTTGGAGTCGTCCTTCATCCCAGCGGCGGCCTTCGCGTCATCGGcgctcaaattcaaaaacaacatgaTGCTGGCCGACTACGCCAAGTCCTACGaagcggcgctgctggccagccAGAGGCACAAGGCGAAAATCCAGAGGATGATGGAAGAAGCGAGAGACTTGGACAAGGTGAGCGTCGACGGGCAATCgaccaatttgaatatatcgatGAACGCGAGGCAAGTGAACTTGGACGACGTTAGAAGTAGTTCTGATGACAATACTATTccggaaaatttcatattcaaaggtGACATTAGACACGATCAAGAGGAGCCGTTCatgacgccgacgccgaggaaaCTATCGCCAGATTCTTCGAAAAGAGCTAGAGATTCTGGTTTTAACACGGACACGTTGAGAAGATTGGGAGTGATCAATCCGGAGGCGTTCTGTAAGATTTGCTGCAAGGAGTATTGTAacaaatatttcttgaaaacgcataaaatcaaaagacaCGGACTCTTACCTTCGCCGACAGAAAAATATAGCAAGGATTCGAGCAAAGAACTACCCTCGATAGCACAAACGGAACCGTCAGAGAGAAAAGAAGGCCAAACTAGTCCATTGAATTTGATAATGGGAGAGGAAAACCCTGAGAAACTCCAGCAGTCACCCGATGTCATAATATCTACCAAACAAATCAATAGATTAATTAACTCGAACCCTTCTAGCAATGTCAGACCTTTATCAACTCAATCCATCGAATCGGTTATCACAGATGAAAAGAAGGATAATTCAAACGaggaatcgataaaaaatgaaaacatcaaacaatCACCGACCACAATATTCATCAGTGAAGATTTACAGAAATTGCAAACCATGATATCACAATTGAATGACTTGAGTGTAAACAAAATTGTTGAAtgttacatatgtaaaaaagaattcgaaaataattacatacttCAATTTCATATGATGTCTGACCACGGTATATCAGTGTCAGGTTCAGTAGATACATTCACGTTTCCGTCTGTCAGTACTGATGAAACAAATTCAGATGGATCCCAACATAAGGCTCTATGTACAATATGTGAAAAGGAGTTTTCATCTATATCActgttaaaaaaacacatagaaGAATTCCATACTCCGAAATCAACATTTAACGATTCTAAATCATCTGCAGATTGTTTACCAGCCGATAAAGAAGGTGCTATCCAAAGAGAACGACGTGCATCAATGTCACTGACTCCAACGAACAGCTATTGTGAAATATGCAACAAAGAACTTtgcaacaaatatttcatgaaaactcATATGCAAAGAATGCACGGAATAGAAATCGAAAACGGCACTCAAATAGGAGGAGTTATATGTGATATTTGTAATAAAGAATTGTGTAGCAAATATTTCTTGAGAGTTCACAAACATAATACGCACGGAATAGTGGAGCCCGGTGCACCTCTTCCACAAATGAGAAATATTGCAGGAGAGCAAGAAAACTTTAATGCACCGCAAGCTGCCAGTCCTTTGAAACCTCCACCGGAAACGAGCATATTGAGTAACAGATTTATCGCTCATTTTGTAGAAGTATGCCCTTTTTGCAGTAGAAGATTTAGAACGAGTAAATGGTTGAAAGCACATCTTTTAAGTGATCATGGTAAAGCTGGCATTGATAAATGGAAAGAGTTAGAAGTACAATATAAAGCTCAAGCCAAAAtgcaatcaaacaaaaacaataagcaACCCAATAATGCAATTAATGTTCCTGAAAATAATAGTTCCACACCGACTCCAAACACACCCATAGAAATGCAAGAGAGAATGCCATTTTACTCAAAACTGACTGaaccaaaaattttgaatttatttggcaTGAATAATCCAGAAATAAAAACCTATAATTGTTCCTATTGTCCCTTTTCTACCTCAATTCTTTCCTTTTTATATGTTCATGAAAAGTCACATTCGCAAAGTTCGGAAATGGACATTTTGTGTCCGATGTGTCCTGAATCGTTTAGTAAACCTGAAGCTCTCCAAATACACATAATAACAGCACATTCGTTGCCAGAGTGGAGAGAAAGATCAACTCTTAATTCGAGTCCAACATCAAATCGTGAGTGCCAAAATACACAAATGAAAACACCGCCATTAGAGATCGATGAgagcaaaaatcaaattcaaactagTAATGGCAGTAATAAGACGGAATTATTCGAATGTTACGAGTGCGATTTCAAGTCGTGTAATTTTGGAGAAATGGAGCAACACTTGAAAAATCAGCACTGTGCTATCAAAGGTGGTACATACGACGTTATTCCTAACAATGATGGAGATTTCAACGACGACATTGGAAGAAAGACGAAAATGCCGGCCATTTATGCAGTTCCTAAAGGTTTGGATGGTGAGAGTGAAGGAACAGAGCAGACTTCTATCACCATGCAGCCGTTTGTGATTGAAGAGAACACTCCAGAAGTCGGAGGAGGAAAGTTTGTTCCTTCTGTTGTGTTTCTACCTGTAAGAAGAAGAGCGACAGGAACAGTAACTATTTCTTTCACTCTTACCCCTgcttag
- Protein Sequence
- MSSGAKRPPAEASAFAPGGTSPCKPKRRKQSTPVRISGEHPGAGPEPPPLPQSPPSPSAEHLAAGGSPQHQQFAAYDRYVEPGYGNNHQHEFYQKCEATGDGDDNDKLSVMKNEHEAAEPLHHQQQQDVAYSHPCPKCGLMFPNAELLRLHHESEHYERNGKDLVECKTEPPFDAEDQNGSPNMGNSTHNPGSVPDPRMEAWSAEFQAKMADLYKNALSFPHDVPKESVPPNFNPLCPPFPLFSSAVPPQRPLMEPIRIFNPEAYCELCSKEFCNKYFLKTHKANKHGIYESAPANSNAEGLNLESSFIPAAAFASSALKFKNNMMLADYAKSYEAALLASQRHKAKIQRMMEEARDLDKVSVDGQSTNLNISMNARQVNLDDVRSSSDDNTIPENFIFKGDIRHDQEEPFMTPTPRKLSPDSSKRARDSGFNTDTLRRLGVINPEAFCKICCKEYCNKYFLKTHKIKRHGLLPSPTEKYSKDSSKELPSIAQTEPSERKEGQTSPLNLIMGEENPEKLQQSPDVIISTKQINRLINSNPSSNVRPLSTQSIESVITDEKKDNSNEESIKNENIKQSPTTIFISEDLQKLQTMISQLNDLSVNKIVECYICKKEFENNYILQFHMMSDHGISVSGSVDTFTFPSVSTDETNSDGSQHKALCTICEKEFSSISLLKKHIEEFHTPKSTFNDSKSSADCLPADKEGAIQRERRASMSLTPTNSYCEICNKELCNKYFMKTHMQRMHGIEIENGTQIGGVICDICNKELCSKYFLRVHKHNTHGIVEPGAPLPQMRNIAGEQENFNAPQAASPLKPPPETSILSNRFIAHFVEVCPFCSRRFRTSKWLKAHLLSDHGKAGIDKWKELEVQYKAQAKMQSNKNNKQPNNAINVPENNSSTPTPNTPIEMQERMPFYSKLTEPKILNLFGMNNPEIKTYNCSYCPFSTSILSFLYVHEKSHSQSSEMDILCPMCPESFSKPEALQIHIITAHSLPEWRERSTLNSSPTSNRECQNTQMKTPPLEIDESKNQIQTSNGSNKTELFECYECDFKSCNFGEMEQHLKNQHCAIKGGTYDVIPNNDGDFNDDIGRKTKMPAIYAVPKGLDGESEGTEQTSITMQPFVIEENTPEVGGGKFVPSVVFLPVRRRATGTVTISFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00816100;
- 90% Identity
- iTF_00816100;
- 80% Identity
- -