Basic Information

Insect: Hydropsyche betteni
Gene Symbol: BCL11B
Assembly: GCA_028571205.2
Location: JAOXNN020000013.1:3347803-3356762[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.7 3.6e+03 2.7 0.0 2 11 27 36 26 39 0.88

2 7 3.8 5.1e+03 2.2 1.8 1 23 196 219 196 219 0.93

3 7 7e-07 0.00093 23.4 2.8 1 23 511 533 511 533 0.97

4 7 9.4e-06 0.013 19.8 4.4 1 23 539 561 539 561 0.99

5 7 6.6e-07 0.00088 23.5 3.2 2 23 790 811 789 811 0.97

6 7 8.7e-06 0.012 20.0 3.3 1 23 817 839 817 839 0.99

7 7 5.6e-05 0.074 17.4 0.4 1 22 847 868 847 868 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.7	3.6e+03	2.7	0.0	2	11	27	36	26	39	0.88
2	7	3.8	5.1e+03	2.2	1.8	1	23	196	219	196	219	0.93
3	7	7e-07	0.00093	23.4	2.8	1	23	511	533	511	533	0.97
4	7	9.4e-06	0.013	19.8	4.4	1	23	539	561	539	561	0.99
5	7	6.6e-07	0.00088	23.5	3.2	2	23	790	811	789	811	0.97
6	7	8.7e-06	0.012	20.0	3.3	1	23	817	839	817	839	0.99
7	7	5.6e-05	0.074	17.4	0.4	1	22	847	868	847	868	0.97

Sequence Information

Coding Sequence: ATGTGTCATGTTCGTGTAACGGTGGGGAAAAATCcggACGCGGACAGTGCAGAAGGAGAATCATCCCAGGACCTGCTGACATGCGGAGGTTGCCAAAAAGCCTTCGCTTTAGCGGACATAGTTCGCTTCATCCAACACAAAGTCCTTGCATGCAATAAGGAAAACTTCTCCCAATGTTTTCCTCAAgCACCCGCAACGGACCGGGACTCAGACGAAGGTGGTCGTCCTCTAGGCGTAGCCAATGCCAGAAGGCCATCAATTTCAGCACCCATGGGTACCAGAAAAGGCAGAGTGCACACTCCACCTCCTGCAAGTCCAGCACTTCCAGCTCCTCACCACCTCCTTGAAGATGGCGCAGCTTCCAGCACGCCAAAAAGGCTACACGAAGacggCGAAACGACGACGCCGAAACGAAGAGCGTCGAGTTCGCCAATGGCGTCCAGTTCACTAGAAGAAGACGTCAAACCTAAAATCAAACAAGAACTTCAAATGGATACGAGTTCGTCGCCCGAAGACGTCCAGAAAAAGTTGAGGACTGAAGTGGCCGATGCCGAATCCAACACCATGCATAGTGAACCAAGCAACTATGTGTGTTCCACGTGCAAGGCGCGCGTACATTCAGCATGGAGATTGTTGCAGCACGTGCAGCACTCGCATGGAGTTAAAATATATGTCGAATCTCCCGGACCAAGTAGCAGCAGTCACAAAGGCAATCATAGCTCGAGCAGTTCTTGCTCGACAAGTTCCTGTTCCTCAGGAGGTGCACCATTACCACCTCCGTTGAGGCATCATCCCCTTttgccgcctccgcctccgGATCTACATTCACCGTTTGGTGTCGGAGGACTGTTGAGGATGCCTTTGGCTGCGAATTTACCACCTCTGAGCCATCCGACTGGTCCTCCAGCGCCTCTGTTTACAAGACCCACACATCACGATCACAGGTTTCGCATGGAGCAACTTGTTTCGGAGCAATTCCGACACCATGGTCTGAATTTagctgctgctgcggctgcaGTCGCGGCTGGAGGCTTACCGCCACATGCACCGTTTCCACCTCCGTCGGATAGACCCCCCGCTCCTCCGGCACCACCTAGAGATAGATCGTTACCACCACCTACCCAGCCACTGTCTTTAGAACCACAGCTGGATTTTTACTCGCAGCGCTTGCGGCAACTGGCCGGTACAACCAGCCCGGGGGCGGCCACAGGCAATTCAAGCTCACCTAGCCCCCGGAAGCATTCTCCTCCGTTTGCTTCCCCGTCGCCTTCCCATCTCCCGACGACACCATTGACTAcgaacaacaataataacaataacaataatgcgagcaacaacaataacaacaatagcAGTAGCAGCAACAGTAATAGCAATCCGAGTCGACCTGAAAGCTTGACACCTCCCGAAAAACGCTCAGAGCTTTCGGCAGCTCCTACCAATACTCCTGCTATCACAACAACACCAAGATCAGCCTCCACACCTCCTAAGCAAGCTTTGTGCTTATCTAACACCCCCGGAGATGCGATTCATTCTTGTGAATATTGTGGAAAAAAGTTCAGATTCCAAAGCAATTTGATTGTACATAGAAGAGCACATACAGGGGAAAAACCTTACAAATGTACTGTTTGCGATCATGCATGTGCTCAAAGTTCTAAATTAAAAAgacatatgaaaattcataaaacaccaGATGACGGTGCTAGTAACGCTGGCTCAGTAGAAACATTAGACGGCGAAGATTCTAACgaggaagaagaagaggaagaattggaagaggaagaagaagacgaagatTATGTAGAGGACGAAGCTGAAGATTTAAGCGTACCTTCTACGGGTCAAGCTCCAAAGCCTCTGAAGCCTCTTAACCATTTGACCCAACCACCGGTTAGTGCCGCATCACTAGTCGGAGAACTAATGGATAAGTTCGGACTATCGAATATAGCCCAATATAGCGAAGCCTATAAACAAGCATTGCAAGAATCGGGAAACGCGCTCAAGTGGCAGATGACTAGCAAAGACCGCGACAACAACAACGGTCTGGGCGCAGTACCTCCAGGAAGCCAAGAAAAGATCAATGGACTCCCACCCACAGCGGCACTCCGTCTAAAAGAGGAGTTTGCAAAAAACATGCTTGGGCAGCCGGGCCCGGGCGGGCCGCCGCACCCGCTCTTCAATCCCTTCGAGAACCCATTCGAAGCCAGCAAAAGAATGAAGCTGGAGATGGAAAGGGGCGAGGGTTGGTGGCTGCCCAATCTACACGGACAGCGGCCCCCGGACAACATATTCGAGAGTCTGAAGCCGAGCCCGAACAGCCTACTTCAGAACCCTCTACTGAAAAATAAAGACAACCGTAGAAACGACACGTGTGAGTTCTGTGGCAAAGTATTCAAAAACTGCTCCAACCTCACCGTGCACAGGAGGTCACATACGGGAGAAAAGCCATACAAGTGTGAGCTGTGCTCCTACGCTTGTGCCCAGAGTTCCAAACTGACCAGGCACATGAAAACTCACGGCCGGCTCGGCAAGGACGTGTACAGATGCAGGTTTTGCGAAATGCCCTTCTCTGTACCGTCTACCCTCGAGAAACACATGAGAAAGTGCGTGGTTAATCAGAGCAAGGGTGGAGCACCTCTGGGCATCATCTCGGATGATTCCAATGCCTGCAAAGAGGAAGCTACGTGA
Protein Sequence: MCHVRVTVGKNPDADSAEGESSQDLLTCGGCQKAFALADIVRFIQHKVLACNKENFSQCFPQAPATDRDSDEGGRPLGVANARRPSISAPMGTRKGRVHTPPPASPALPAPHHLLEDGAASSTPKRLHEDGETTTPKRRASSSPMASSSLEEDVKPKIKQELQMDTSSSPEDVQKKLRTEVADAESNTMHSEPSNYVCSTCKARVHSAWRLLQHVQHSHGVKIYVESPGPSSSSHKGNHSSSSSCSTSSCSSGGAPLPPPLRHHPLLPPPPPDLHSPFGVGGLLRMPLAANLPPLSHPTGPPAPLFTRPTHHDHRFRMEQLVSEQFRHHGLNLAAAAAAVAAGGLPPHAPFPPPSDRPPAPPAPPRDRSLPPPTQPLSLEPQLDFYSQRLRQLAGTTSPGAATGNSSSPSPRKHSPPFASPSPSHLPTTPLTTNNNNNNNNNASNNNNNNSSSSNSNSNPSRPESLTPPEKRSELSAAPTNTPAITTTPRSASTPPKQALCLSNTPGDAIHSCEYCGKKFRFQSNLIVHRRAHTGEKPYKCTVCDHACAQSSKLKRHMKIHKTPDDGASNAGSVETLDGEDSNEEEEEEELEEEEEDEDYVEDEAEDLSVPSTGQAPKPLKPLNHLTQPPVSAASLVGELMDKFGLSNIAQYSEAYKQALQESGNALKWQMTSKDRDNNNGLGAVPPGSQEKINGLPPTAALRLKEEFAKNMLGQPGPGGPPHPLFNPFENPFEASKRMKLEMERGEGWWLPNLHGQRPPDNIFESLKPSPNSLLQNPLLKNKDNRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQSKGGAPLGIISDDSNACKEEAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00158609;
90% Identity: iTF_00816071;
80% Identity: -