Hbet002501.1
Basic Information
- Insect
- Hydropsyche betteni
- Gene Symbol
- -
- Assembly
- GCA_028571205.2
- Location
- JAOXNN020000013.1:1383554-1390056[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.035 47 8.6 2.7 1 19 214 232 214 237 0.94 2 10 2.4 3.1e+03 2.9 2.4 5 23 246 264 236 264 0.89 3 10 2.6e-05 0.035 18.5 1.4 1 23 270 292 270 292 0.95 4 10 0.00023 0.3 15.5 2.2 1 23 300 322 300 322 0.97 5 10 2e-05 0.027 18.8 0.1 1 23 331 354 331 354 0.94 6 10 8.8e-06 0.012 19.9 0.4 1 23 360 382 360 382 0.95 7 10 1.2e-06 0.0016 22.7 3.1 1 20 388 407 388 410 0.95 8 10 2.7e-05 0.035 18.4 0.7 1 23 415 437 415 437 0.99 9 10 1.4e-05 0.018 19.3 1.7 1 23 443 465 443 465 0.98 10 10 0.0058 7.7 11.1 5.4 1 23 471 494 471 494 0.96
Sequence Information
- Coding Sequence
- ATGGGCGCGTCGGTGCGGGTCGTGTGTCGACTTTGCGCAAATATTCCCGACAACACACACGACGTTTTTACGCACAATGGACACCAGACGCTCGCGCAGCTCATAAGAATCTATCTGGACATAGACATCAACAGCGATGACCGCTTGTCGTCGGTCGTTTGCGACTGCTGTCGGGAAAAGATGACCTccttcgacgacttcgccgtTAAATGTAAGAAAGTTCAAAAGACTCTGGTCGCGTTGTGCGAAAGAAACGTATCTTTGAACGAAACCATTAACAATTCCCAAAATGACGAGTTGTTagggttgtataatatttctgtcAAAGAAGAGAATGTTGACAGTGTTTCGGTGAAGTCTGAGAATTTTTCGGATGATTTTAACGACGATGACTTGTTGCCCATATCGGAATGTATCAAAAAGAAGCCTAAGAagaggaaattgaaaaatggtgACTCTAAAAGTAAACAtagtaaaattaagaaaattcgtattaaatctGAAACTGAAGACAatcctataattaaaaaagaaattgattcgTTTGAAAACGGACTCGATGTTCAAAGTGATGATATAGATGGGTTTAGAAAACGTACTAGAaaaggcataaaaaatataaggaatTCGTTTTTAAGCTTCTGTTGTCATATATGTTCTGAAGAGTTTATAACTTTCGGCACGTTGAAAGCTCATTGCACACAAACACACTGCACGAGAGCTATGGTGAGATGTATGTGcgacaaatatttgtatacaagGCATTCCATCAATAGACATATTGTTAAGCACGACGAATCTCAAGGATTTAAatgcaAAGAATGTAGTAAAACCTTTGCATCGCGCAAAGCTTTGCAAGTTCATTCGTACGTTCACGTGCCTAAAGATCAATATTCGCATGTTTGCAGTCATTGTGCGAAACGTTTCGCTACTGCGTTTGCTTTGaatatacacgaaaaaactCATTTGCCCAAAGAGTTAAGGTATACTTATCCATGCGACATATGCGGAgtgaaATTCATTTCAAAAAGCAACGTAAAAACCCATATAAGCGccgttcatgaaaaaaatcggccTTACGTATGCGACGTTTGTGGACACGCTTTCAATAATAAAGGTAATCTTCAAGATCATCGAGTATTACAtaacgaagaaaaattatttaactgtcCCAAGTGTCCTAAAagttttaaaactAAAGGTAATCTTCAGCGCCATATTGATTGTCACGGTGGGACTTCGTATAAGTGTCCAGAATGTCCAGCCGTTTTGAGCACTCGTAGAACTCTTCGCATGCATATGTGCATTCATGAGGACACATGTAGATATATTTGTGCGTTTTGTAATAAAGGTTACAAACGAAGAAAATCGTTAAAAtctcatatgaatattcataccGGCGAGAGACCTTACTGTTGTCAATGGTGTCCTAAAACTTTTGCCGACAACTCTAATTGTCGTATTCACAAAAAAAGGATGCATCCTAATGAATTAGCAGAATATGAGGCTTTACATGGAAAACATCAAGtaGTAAAAGATGACATTCCCGAagagaaaaaaATAAGATTTAATGATCGCTTATCGTCGGTCGTTTGCGATGGCTGCAGAGAAACGATAATCTCTTTCGATGACTTTGCACTTAGATGTAAGAATGCCCAAGAAACGCTAGTGGCGTTGCGGAATCAGGATTCGTCGTTGAACGATTCTGTAGGTTGTTCTTATAGTGaagatatttctgatttttgcCTTATTACCGTTAAAGAAGAAAACATTGACAGTTATTCTGTAAAATCTGAGAATTCTCTCGATCTCAGCGATGATAATTCATCGGCAATATCAGATTATGTCGAACAGATCGAAAAAGGCGAAAGGATGTCAACGAAGAGAAAATTAAGAAGACAATCTGAAAGTGATcacagtaaaattaaaaagattgcTATTGGACCTGAAGCTGAAAGTCAAACCGTAATTAAGACAGAACCTGAATGTTGTGATGATAGACTCGAAGAGAAAATTAGCGATTTGAATGAAACACAAGATACGAgtgaaactatgaaaaatacGAAactaTCCATGATGCAATTTGTAAAATCGAGAAAAGGAAAAGAGAAAGTGATCTTTGAAGGTTATGTCTATGTTAAACAGAAAAATTTAGCTAACGGTGTTGTGTCATTTGAATGTGAGAAAAGGCGTAACAAGTTAGAATGTAAGGCTAAAATTAAAGTCCGTGAAGGAATGCTGGTGGGCCGGTTAAACAATCATTCTCATACTCCAAATCCATCAAGAAGAGAGTTTCTAGATATTGCTCAAAAAATGAATAGACCAGCCGAAGAAACTGAAGAAGCATcgcaaaaaattgtaaatcaatttgtttcaCCGATAAGTGACTATGCAATGGCTGATATTTCATCGTCTGTGGCACAATTTCAAATGTTACCGTCAAGTTATTACCTGTTTCGTTGA
- Protein Sequence
- MGASVRVVCRLCANIPDNTHDVFTHNGHQTLAQLIRIYLDIDINSDDRLSSVVCDCCREKMTSFDDFAVKCKKVQKTLVALCERNVSLNETINNSQNDELLGLYNISVKEENVDSVSVKSENFSDDFNDDDLLPISECIKKKPKKRKLKNGDSKSKHSKIKKIRIKSETEDNPIIKKEIDSFENGLDVQSDDIDGFRKRTRKGIKNIRNSFLSFCCHICSEEFITFGTLKAHCTQTHCTRAMVRCMCDKYLYTRHSINRHIVKHDESQGFKCKECSKTFASRKALQVHSYVHVPKDQYSHVCSHCAKRFATAFALNIHEKTHLPKELRYTYPCDICGVKFISKSNVKTHISAVHEKNRPYVCDVCGHAFNNKGNLQDHRVLHNEEKLFNCPKCPKSFKTKGNLQRHIDCHGGTSYKCPECPAVLSTRRTLRMHMCIHEDTCRYICAFCNKGYKRRKSLKSHMNIHTGERPYCCQWCPKTFADNSNCRIHKKRMHPNELAEYEALHGKHQVVKDDIPEEKKIRFNDRLSSVVCDGCRETIISFDDFALRCKNAQETLVALRNQDSSLNDSVGCSYSEDISDFCLITVKEENIDSYSVKSENSLDLSDDNSSAISDYVEQIEKGERMSTKRKLRRQSESDHSKIKKIAIGPEAESQTVIKTEPECCDDRLEEKISDLNETQDTSETMKNTKLSMMQFVKSRKGKEKVIFEGYVYVKQKNLANGVVSFECEKRRNKLECKAKIKVREGMLVGRLNNHSHTPNPSRREFLDIAQKMNRPAEETEEASQKIVNQFVSPISDYAMADISSSVAQFQMLPSSYYLFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -