Basic Information

Insect: Hydropsyche betteni
Gene Symbol: -
Assembly: GCA_028571205.2
Location: JAOXNN020000084.1:284470-291293[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 4.9 6.4e+03 1.9 0.3 1 23 471 493 471 493 0.94

2 19 0.0057 7.5 11.1 0.4 1 23 501 524 501 524 0.91

3 19 0.028 37 8.9 2.4 1 23 700 722 700 722 0.95

4 19 2.4 3.2e+03 2.8 0.7 2 23 732 755 731 755 0.90

5 19 0.0059 7.9 11.0 0.5 1 23 759 783 759 783 0.97

6 19 0.00034 0.45 14.9 3.6 1 23 788 810 788 810 0.98

7 19 0.011 14 10.2 2.8 1 23 816 838 816 838 0.97

8 19 0.039 52 8.5 0.1 2 21 849 868 848 869 0.91

9 19 3.3e-06 0.0044 21.3 4.1 1 23 1105 1127 1105 1127 0.99

10 19 1.1 1.5e+03 3.9 2.6 1 23 1134 1156 1134 1156 0.89

11 19 0.27 3.6e+02 5.8 5.1 1 23 1186 1209 1186 1209 0.93

12 19 3.8e-06 0.005 21.1 0.8 1 23 1216 1239 1216 1239 0.97

13 19 0.00055 0.73 14.3 0.2 1 23 1253 1276 1253 1276 0.96

14 19 0.0011 1.5 13.4 1.0 1 23 1291 1313 1291 1313 0.97

15 19 0.00043 0.57 14.6 1.4 1 23 1318 1341 1318 1341 0.97

16 19 0.024 31 9.1 1.5 1 21 1347 1367 1347 1369 0.94

17 19 0.04 53 8.4 6.4 1 23 1375 1397 1375 1397 0.98

18 19 3.2e-05 0.043 18.2 0.2 1 23 1403 1425 1403 1425 0.97

19 19 0.0043 5.7 11.5 2.6 1 23 1431 1454 1431 1454 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	4.9	6.4e+03	1.9	0.3	1	23	471	493	471	493	0.94
2	19	0.0057	7.5	11.1	0.4	1	23	501	524	501	524	0.91
3	19	0.028	37	8.9	2.4	1	23	700	722	700	722	0.95
4	19	2.4	3.2e+03	2.8	0.7	2	23	732	755	731	755	0.90
5	19	0.0059	7.9	11.0	0.5	1	23	759	783	759	783	0.97
6	19	0.00034	0.45	14.9	3.6	1	23	788	810	788	810	0.98
7	19	0.011	14	10.2	2.8	1	23	816	838	816	838	0.97
8	19	0.039	52	8.5	0.1	2	21	849	868	848	869	0.91
9	19	3.3e-06	0.0044	21.3	4.1	1	23	1105	1127	1105	1127	0.99
10	19	1.1	1.5e+03	3.9	2.6	1	23	1134	1156	1134	1156	0.89
11	19	0.27	3.6e+02	5.8	5.1	1	23	1186	1209	1186	1209	0.93
12	19	3.8e-06	0.005	21.1	0.8	1	23	1216	1239	1216	1239	0.97
13	19	0.00055	0.73	14.3	0.2	1	23	1253	1276	1253	1276	0.96
14	19	0.0011	1.5	13.4	1.0	1	23	1291	1313	1291	1313	0.97
15	19	0.00043	0.57	14.6	1.4	1	23	1318	1341	1318	1341	0.97
16	19	0.024	31	9.1	1.5	1	21	1347	1367	1347	1369	0.94
17	19	0.04	53	8.4	6.4	1	23	1375	1397	1375	1397	0.98
18	19	3.2e-05	0.043	18.2	0.2	1	23	1403	1425	1403	1425	0.97
19	19	0.0043	5.7	11.5	2.6	1	23	1431	1454	1431	1454	0.95

Sequence Information

Coding Sequence: ATGAAGAATCAAAAGAATCAGATGACGTTGACGCTGTGTTTGGAGGACAACACTGGAAAAGACACCAATCTGGAAGTAAGGCCCGATGACGACTTCGGATCGTTTCTTCAAAAGGCCAAAAAAATACTGGGATATCTCCCCAAACTCAGCGACATAACTGAAGGAAAACCCGTTTCGCTGAacgataatatttacaaatttttgatcGAAGCGGAAATGAAAAAGGATTCTGGAGAAAATGCCAACGTCAAAAACGACGATTTAGAAGAATTCGCGGAAATTGAATATCTCTCGGAGGAAGAAGAGATTGAACATATCACATCGGAAAACAGACCCCTGATTCCTCTGGCCGAAGACAAGGCATTGAAAACTGAAGACTCGGAAGAGTTCACTCAAATGGAATATTTAGAAGATGACAGCGAAGATCCCGACATTGTCGATTTAGAAGTTTTAGAATCCTCGTTGGACGAAGATGAAATAGGAAATTCTCTCCCTAAAAAGAAACGTCGACTGGACAACGAAGAAGATGACGACATCGTCGATTACATTAACAATACGCCGGTTTCTCCGAAagaaagtaacaaaaaaatatacacaaccaAAGAGTTGTTGAACGTGTTGGGTAATTCTTCCGAGAGTGAATCCGAAGAAGGAAAGTTCAAAGATAAAAACGGTGACAATTTAAATGGTcagttttctaataaatttaaaataaaaaataaaatgggatcAAAATTTGCCAACGAAAAGCAAAGggaaatcgataaaaagttGACTAATTTGAAAGATATCAAAAAGAGCACATTTTATGCGAGAAGACAGTTAGAAAAACGATTTGCCAACAGTGCTAGGAAAACTGCCGATGTCGAAGCCGGCTTTAAAATGAGCTCTTTTGACGTAGCCATGCTTAAAAGAAACGTTCGGCCAACATCCGATAGAAATAGAAAAGCGAGCAAAGAAGAAGACGATCAGGATGGTTTTAGTTCGTCAGTAAACTTGGAAGATTCTAGATATTTGCCTTCGAATTATGAAGACGTTGACAATGAAGGGGTATACGATTACATGGAcgatttgtatggaaaagtagaTGTAAACGATTTACTCACTGAAAGGAAGGCTGTGGATTTTGTCAAAAAAGATACCAGAGATGATATCGCGAGAGCTGTTGGAGGAATGAATAAAGTGTTGGGAATCGACAGGAAGTTTGGTGTACTACCTGTCGTGAAACGTCCCAGAGGAAGGCCGAGAAAAAATGCCCCACCTGTTGAATACGTTCAACAGGAGAATGTTTTATATGATAGCCATAGTTCGTATTTAGAAAGTGTTGTTAAATTCGAGCCCGTCGATGTTGAAGATGAAGATTACGTACCTGGGAAAGATATAGAttggatgaaaaagaaaaaagacaaaTACAACTGCAgAATGTGTTTCAACAATTTTCCAAGTCTGACTATGGCTATAAGTCATGCTCTTACTCATAGAGTGCCACATAAATCAGTGTTTCCATGTATTTTGTGTGCTTACGGGTTTACTACTTATACCGAACttcaaaaacatatgaaaaGTGATCACCGAAAAAAGCGAGTACCTAAAAAGACCGGTGTAGTTCAACCTAGTAAGCCGAGAGTTCCCAAGCCGAAAAAAGAACCAAAGCCTCAGTTGGCACCGATTAAGCTAGAAATAATGGACGACGAAGAGGTTTGTGATGTGGAAATGTTGGAAGAATGGCTCGAAGAAGAAGTCGATGTCGATGAATCGTATTCAATGGAAACTGAAGTATCAAACGAAATACCTCAGTTAAAAAGTAACATCAAAAAGGACATGGATGATTCATATgaattcaaaactgaaaacattgatttttttgagtctggtgatgatgatgaagaatggTTGATGGACGAAGCTGACGATGATACATCATTTGATGATAATATGCGATCAGTGACAGACGATATAGGAATGAAAAAGAAGCGTAggccaaaaaacacaaaacccaaatGTCGAACGTGTTTATGTCGTTTCGAGAATGAAAATGAAGTTCTCGAGCATAAATGTCCCGGTCCCAAAGAGAGGTTAAGAGGAACGCGCGGCTCTCATCGTTGTGCCTTGTGTGGACAAACATTCCCTTCTCGAAGGCGCCTTATTTATCATAGATCTTTTCATCAAGTGGAACTAATAGAATGGAAATTAGTCTGTAAACATTGCCCGACCAGGAAGTTTTTGACTGAGGCTGACCTATTCGATCACATTAACAATGAGCATAATGTCGATTTTGTTTGTGACGAACCTGGATGTAGTAAACAGTTTCACCTCCGAACTGCTTTAAGAGCTCATGCACGTACTcacggaaaaaaaacataccaatgTCAAGAGTGTGGAAAACAATTTCAtgatatacataatttgaaGGAACACAATATAACACATTTAGCGGTTAAACCTTTCCAATGTCATATatgtcttaaatttttaaatagaagatCCCGTTTACGAATGCATTTGTTAGCGCACGAATCTTGCCCTGttgaaaattgtgtattatCATGTAAGCATTGTAAAATGGCCTTTAAAGATGCAGCCGATGCGGAGagtCATGTAAAAGAATCTGAAgagtgtttcaaaaatatattatcaaatgacAGCTCTGATTTGATAGCAGAATTAGAAAACTTACACGAACGTCATgttgataaaaatcttttagaaGATATTAAGGATGAAACTAGTAaagatatttctgaaaatattggaGCCGAAACATCGGTTGATGAAATCGTTAATGAAACGTTAGCTAAAACTGGTATAGTTTCTTTACCTGTTGATAGTATGATTAAACAAGAAAACTCGGAGGTTAATCCTGAAGAAATTTCTAACGAAGATCATTTTAAAGCTTTGCTGGCTGAAGTCGACGTAGCAGCTGATAAATTAACCGTTATGCTAACTCAAGATGGAATATTagagaaccatgtaaaaaatgaatgcaaaGAGTCTATTCCTAAAGACACTGCTGCTGTCGATAATATCAACGAACTTTTACAAGCTAGCAATATCAAAGACTTGTTAGAAAATGTCGGCTCTACTTTAGGCAGTGAAGAAAATGAATCTTTAACCGATCAAATAGCAGTTGccgatttggaaaaaaacatcgatGATGGAAATGAAAGTCAGGGGAATGATAGAGAAAACTCAGATTTCTCAAATAGTGGAAAAAGTATAAGAAACACTAGGATTTACACAGAAGAAGAACTTTTATCACAACTGACGGATGATACCAAAAAACTCATAACAGCAGTCAAAATCAAAGTTGTTTATAGATGTGAATATTGTGAAAAAACCTTTTGTACAAAGGATGCTCTTAACACTCATAGAAAAGTTCATGATGGTTTGAGAAATCCAttcatttgcaatatttgtAACGCAGCTTTTTCTACATTTGCTAGatgcaCTTCTCATAAAACTACGCACggtttttataaacttattacCGATGATGAAAAGGAAAAGGGTTCTCATGAGGTTAGcggatatgaaaattttccagtaatcaaatattttttgtgccagAGTTGTCCTAAAACCTTCTTACACTGGACATATCTTCAAGTTCATAAAAGACACAAACACGGAGAAAGCACATACTActtcaattgtaaaatttgtgGTGAAAAGTTCACCGACAGTTGGCTTTTAAATTCACATCGCAGAAAAGTCCATGCTGAAGTGGTTAATTGTAAGAAGAGTGCCAAcaCAAGTTACAAGTGTGCCGACTGTGGCCAAGGTTATAACAAGCGTATACAATTGGCCAAACATAGACAAGAAGTCCATAATGACTATTCGTTGATGGCTCTCAAAAACAAACCAGGTCCGTTCGCTTGTACTTTGTGTGACAAAATGTATCACACTAAAGTGGGATTAGATGGTCACATGAGatcACATAATGgagatatttatatatgcgaTCTTTGCGGTAACAGTTTTGCTCATCGTGCTGGTCTCGAAACACATCACAaACGTGTACACTTGAGAGAACAGAGGTATATCTGTCGCACTTGTGGACAAAATTTCTTTACTCCTGCTGACTTGGATATACATAGAAGGTGTCATACAGGTGAAAAACCTTTCCCGTGTGATTTTTGTCACATGTCGTTCCGTACAAAAGGTAGAAGAAACGAGCATCATAGGACACATACTGGAGAGAGACCATTCCCTTGCGATATATGCGGAATGGCTTTTCGAAGATCTAATGCTATGAAAAACCATCGCCTCATTCATACTGGCGAAAGACGACACACATGTCCATATTGTCCGAAACTTTTCCATGTTTATGCCAATCTTAAATCCCATGTCAAAGCAAagcATCCGGGACAATgtgttattttacaatttgagtCTGACGGTCAGGATTGTATCGAAGAATCTTTGAAAATGTTTGCTGAAAGTGAACACGATGTTGTTACAACAAACGATATAATTAACGATCCTAGCAAAATGCTTGTTTTGGAAGATGTTATTATCGAAGAAAACGACGGTGACAATATCATCCGAGCAGATGACTCTGCAAATATATTGGAGTATACATACGAACCTGACATAGATGCTCATGTGCAAGGggaTGAGATTTCTGTGAACCCCGTTGAATATGTTGATACGAAGGACAATAAAGTTCAAATTCAGCTACTGGAAGCCACCGATCATGGACAAGGTTTATTGTATGCTGTCGAAGATGCTACCGACTTGATTCAAGGTGAAGTGCATTACACATTAGTTGATGACTTAGGAGAAGATACCAAACagcaattttcaatcatatcgAGCGATCCATTTGTGAAAGAAGAAAAGGACCCcatttattatagttaa
Protein Sequence: MKNQKNQMTLTLCLEDNTGKDTNLEVRPDDDFGSFLQKAKKILGYLPKLSDITEGKPVSLNDNIYKFLIEAEMKKDSGENANVKNDDLEEFAEIEYLSEEEEIEHITSENRPLIPLAEDKALKTEDSEEFTQMEYLEDDSEDPDIVDLEVLESSLDEDEIGNSLPKKKRRLDNEEDDDIVDYINNTPVSPKESNKKIYTTKELLNVLGNSSESESEEGKFKDKNGDNLNGQFSNKFKIKNKMGSKFANEKQREIDKKLTNLKDIKKSTFYARRQLEKRFANSARKTADVEAGFKMSSFDVAMLKRNVRPTSDRNRKASKEEDDQDGFSSSVNLEDSRYLPSNYEDVDNEGVYDYMDDLYGKVDVNDLLTERKAVDFVKKDTRDDIARAVGGMNKVLGIDRKFGVLPVVKRPRGRPRKNAPPVEYVQQENVLYDSHSSYLESVVKFEPVDVEDEDYVPGKDIDWMKKKKDKYNCRMCFNNFPSLTMAISHALTHRVPHKSVFPCILCAYGFTTYTELQKHMKSDHRKKRVPKKTGVVQPSKPRVPKPKKEPKPQLAPIKLEIMDDEEVCDVEMLEEWLEEEVDVDESYSMETEVSNEIPQLKSNIKKDMDDSYEFKTENIDFFESGDDDEEWLMDEADDDTSFDDNMRSVTDDIGMKKKRRPKNTKPKCRTCLCRFENENEVLEHKCPGPKERLRGTRGSHRCALCGQTFPSRRRLIYHRSFHQVELIEWKLVCKHCPTRKFLTEADLFDHINNEHNVDFVCDEPGCSKQFHLRTALRAHARTHGKKTYQCQECGKQFHDIHNLKEHNITHLAVKPFQCHICLKFLNRRSRLRMHLLAHESCPVENCVLSCKHCKMAFKDAADAESHVKESEECFKNILSNDSSDLIAELENLHERHVDKNLLEDIKDETSKDISENIGAETSVDEIVNETLAKTGIVSLPVDSMIKQENSEVNPEEISNEDHFKALLAEVDVAADKLTVMLTQDGILENHVKNECKESIPKDTAAVDNINELLQASNIKDLLENVGSTLGSEENESLTDQIAVADLEKNIDDGNESQGNDRENSDFSNSGKSIRNTRIYTEEELLSQLTDDTKKLITAVKIKVVYRCEYCEKTFCTKDALNTHRKVHDGLRNPFICNICNAAFSTFARCTSHKTTHGFYKLITDDEKEKGSHEVSGYENFPVIKYFLCQSCPKTFLHWTYLQVHKRHKHGESTYYFNCKICGEKFTDSWLLNSHRRKVHAEVVNCKKSANTSYKCADCGQGYNKRIQLAKHRQEVHNDYSLMALKNKPGPFACTLCDKMYHTKVGLDGHMRSHNGDIYICDLCGNSFAHRAGLETHHKRVHLREQRYICRTCGQNFFTPADLDIHRRCHTGEKPFPCDFCHMSFRTKGRRNEHHRTHTGERPFPCDICGMAFRRSNAMKNHRLIHTGERRHTCPYCPKLFHVYANLKSHVKAKHPGQCVILQFESDGQDCIEESLKMFAESEHDVVTTNDIINDPSKMLVLEDVIIEENDGDNIIRADDSANILEYTYEPDIDAHVQGDEISVNPVEYVDTKDNKVQIQLLEATDHGQGLLYAVEDATDLIQGEVHYTLVDDLGEDTKQQFSIISSDPFVKEEKDPIYYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00816025;
90% Identity: iTF_00816025;
80% Identity: -