Hbet008368.1
Basic Information
- Insect
- Hydropsyche betteni
- Gene Symbol
- -
- Assembly
- GCA_028571205.2
- Location
- JAOXNN020000048.1:23419-26833[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 4e-05 0.053 17.9 0.3 2 23 244 265 244 265 0.97 2 8 0.00019 0.25 15.7 6.7 1 23 269 291 269 291 0.96 3 8 3.3e-05 0.043 18.1 2.6 2 23 299 320 298 320 0.97 4 8 0.0033 4.4 11.8 2.4 1 20 327 346 327 350 0.87 5 8 3.1e-06 0.0042 21.4 5.2 1 23 357 380 357 380 0.98 6 8 1.1e-06 0.0015 22.7 0.4 1 23 386 408 386 408 0.98 7 8 4.4e-06 0.0059 20.9 0.8 1 23 414 436 414 436 0.98 8 8 1.8e-07 0.00024 25.2 2.3 1 23 442 464 442 464 0.98
Sequence Information
- Coding Sequence
- ATGGAGGACGAAAAGACGGGCGGAGTCCTTTTCAGGATCGACAGATTCGACAGGGACGACGCGCAAGTCAGCTGCTGCTTCTGCTTCGGCAGCACTAACTTGCGCGACATCACCGCCACTTATTATCACGAAGGCAAACCCGAAGTGTACAACCAGATGATACAAGATTGTTTCTCTATAAAATTGTTGAAAGAACAAAGTCAGGATGGTAAAGGCCCTTATATGATCTGTGAACTTTGCGTTGCTCGATTACGAGAAGCATACTTCTTCAGGATGATTGTAGAAATAGCTCGAGCGGCCATTCAACAAAAAGAATCTATCAAAATAGAATCTAATATAGATGACTTTGATTCTCTGTCAAACAGTCCATACacttacaatattcaaatcctTTGTGATCCTCCCGAAAATGCTGCCGGGAACAACAACGGCCACGAGCGAGTCAATCCCGACATTTCGTCAAAGACCGCTTCGTGGGTGAAACCTGTGTCGTGGTCGAAATCCATACGAGAGAGTATCGAAGATAAATACACCCCAGACGATTCAGAAGAAGACGACGTACCGTTGAACAAAATCAAGAAATTGTTCAACAGAAAAGGCGGCATCAAAAAGTTGAAATCTAACAAAAAGaaacttatgaaaataaaagaagagaTAGACACCGAATCGAGGAAACACACAAACGAAAGTCTAACGAAAAATCTTGATTCTACGTACCTTAGTGAAAATCGCTGTAAAATTTGCAGCGAAACGTTCCCGTTACGCTCCGGTCTCATAAAACACATGGCTTCTCATTCCGCAGCGCACATATGCGACATTTGCGCAAGATGTTTCACTTCGAAATCGAACTTACACAGCCACTTGACACGTCACCGACAACACAAAGATATGGTGTCGTGtcacatatgcaaaaaaatgtaccGAGGCAccatgaatttgaaaaagcatCTACGAATCCACCGAACGCCCAACGAAATATACAAATGCCCGCATTGCCCCGAAAGGTTTTCAAACTATTACCGACGAATGCAACATCTTGTAGACTTTCACGACGACGAAGCGAAAAAGTACAAATGCAAACACTGCCCCAAAAGGTATTGTCAGGCGACTACGCTAACGCGTCATATTAAAGTCGTACATTTGCAAGAACGACGGTACTCTTGCGATATGTGCGGCATGACTTTTTACGATAGGTCGGCGCTGAAGGGGCACATGCTGAAGCATTCGGGAATCAAGAGGTTCCGGTGCGAAGTTTGCAGCAAGGCGTACGCTAGACGATTTACGTTAAACGAACATATGAAAATCCACGATAATGTCAAGAAATTTGTATGTCCGATTTGTAATAGGCCGTTCACTCAGAAATGTACGCTTAAAAATCACATGAAGGTTCATAAAAAGGATCAAGTAGAGATCCAGTATAGTGAGGATATGTAA
- Protein Sequence
- MEDEKTGGVLFRIDRFDRDDAQVSCCFCFGSTNLRDITATYYHEGKPEVYNQMIQDCFSIKLLKEQSQDGKGPYMICELCVARLREAYFFRMIVEIARAAIQQKESIKIESNIDDFDSLSNSPYTYNIQILCDPPENAAGNNNGHERVNPDISSKTASWVKPVSWSKSIRESIEDKYTPDDSEEDDVPLNKIKKLFNRKGGIKKLKSNKKKLMKIKEEIDTESRKHTNESLTKNLDSTYLSENRCKICSETFPLRSGLIKHMASHSAAHICDICARCFTSKSNLHSHLTRHRQHKDMVSCHICKKMYRGTMNLKKHLRIHRTPNEIYKCPHCPERFSNYYRRMQHLVDFHDDEAKKYKCKHCPKRYCQATTLTRHIKVVHLQERRYSCDMCGMTFYDRSALKGHMLKHSGIKRFRCEVCSKAYARRFTLNEHMKIHDNVKKFVCPICNRPFTQKCTLKNHMKVHKKDQVEIQYSEDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00816009;
- 90% Identity
- iTF_00816009;
- 80% Identity
- -