Hbet090662.1
Basic Information
- Insect
- Hydropsyche betteni
- Gene Symbol
- -
- Assembly
- GCA_028571205.2
- Location
- JAOXNN020064386.1:6078-17860[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0051 6.7 11.3 1.0 1 23 122 145 122 145 0.91 2 12 3 4e+03 2.5 1.5 5 23 154 172 152 172 0.94 3 12 1.9e-05 0.025 18.9 0.8 1 23 178 200 178 200 0.99 4 12 0.00013 0.18 16.2 1.7 1 23 207 229 207 229 0.98 5 12 7.4e-07 0.00098 23.3 1.3 2 23 239 260 238 260 0.96 6 12 0.0025 3.3 12.2 1.1 1 23 265 287 265 287 0.98 7 12 2.2e-06 0.0029 21.8 5.7 1 23 293 315 293 315 0.97 8 12 3.8e-07 0.00051 24.2 0.8 1 23 321 344 321 344 0.98 9 12 0.095 1.3e+02 7.2 0.1 9 23 388 402 386 402 0.94 10 12 0.0013 1.7 13.1 1.7 1 23 407 429 407 429 0.98 11 12 6.9e-06 0.0092 20.3 4.6 1 23 435 457 435 457 0.97 12 12 1.2e-06 0.0015 22.7 0.8 1 23 463 486 463 486 0.97
Sequence Information
- Coding Sequence
- ATGTTCCAAgcgtataaaaatgatattattgatGGAATAAATCATCAACTTGTAAAAACCGAAGATAATgtcgaaattcaaatcaaagaaGAAATCGACGATTATaatGATGACCATAATATGGAAGAATGCACTGATTGTGAGTTTTCGGAACCAATTGAAACAAAGAAAAGTAAAAACTCGTTGATAAAAGGGAGAAGAAAAAGTCTGcgtaaaaagagaaaaataactCCTCCCAAAAGTATAATTTACGGTGTTAAAGCTTTACTGAAAGATGAAATCAAAGATTGCATTAAGAACGAAGATAAGAAATGTAAACGTGataacaaaaccaaaaagaaagATGAATTAGTCTTCATTAAatATAAATGTCACATATGCGAAGTCGAATGCAAAAATTGGACAGCTTTAAGTTTGCATGCTTCAGAAGTGCACGGTACTAATCCACAAATAAAATGCGTTTGCTCAAGAATATTGTCTAATGTACGATCAGTTCAAAGACACAAGAGAAAACACGATCCCAATAAATGTTATACcTGCGATTATTGTCAGAAAACATTTGGTTCGAAGAAAGAAATCGAAATGCATATTCTCACCCACTTACCAGCGATTAAACCGTACGTATGTTGCAAATGCGCTAAAAGTTTTTCTAGTCCGTATGTATTGAAAGTACATGAAAATACTCATAAGCCTCAAGAAGAACGTTTCATATGGCCCTGTGAATTATGTGATAAGacGTTTAAAACGAAAGGGTCCCTTAATCATCATATGGATTCTCATGCAGATACGGCTTATCAATGTCCACATTGTCCTATGTTACTCAATACTCGTATGACTTTGAGGAATCATCTTTACGTTCACGATGAAATTGCAAGTCATCCTTGTTCAATgtgcaaaaaaacatttaaaacgaaaaaaaatttaacgagcCACATGAAACAACACACTGGCGAACGTCCGTATTCGTGTCCGTGGTGTCCACGGACATTTTCTAGTGCCTCAAATTTCAGAATTCACAAACGACGGATGCACCCCAGTGAATTTGAACTAGCTGATAAAGACAATCCTTACCTTCGCCCCAAAGgCGTGTACCCCGTGTACACCGTGGGCACCATGGTGCTTAAGGGCACAGGGATGGGAATGCCCAATGTGCCGGAATGCCGGTTTAAAACGAAAGGAGCCCTTAATAAACATAGAGACACTCATGGTGATACGGCTTATCAATGTCCACATTGTCCTATGTTACTCAATACTCGTAAGACATTGAAGAATCATCTTTACATTCACGATGAATCTGCAAATCACCCTTGTTCAGTGTGCAAAAAAGcgttcaaaacgaaaaaatatttaaagagcCACATGAAACAACACACTGGCGAACGTCCGTATTCGTGTCCATGGTGTCCACGGACATTTACTAGTGCCTCAAATTTCAGAATTCACAAACAACGGATGCACCCTACTGAATTTCAATTAGCCGATAAACAAAATCCTTACCTACGCCCCACAGTATTGTTGAAACATAAAGTTATATTAGTTGGAGGTGAAGATAAAGATCATAATATTACTAATACGgttCAGAGCTACGATTTGAATACCggtgaaatagaaaatttgccaccaatgaaatatgcaagacaGAAGATAGCAGCAATAGAATTTAAAGGACGTGTATACGCGATTGGTGGATATAACGAAAATCCCCTACCTTACTTAGAAATgtgggacccaatattaaaaatatggaaaacactTACTTCGATGACGATTCCGCGATTTGGATTCCAAGCCGCTGTGTTAGATGATGAGATTCTTGTTGTTGGAGGTTTTAATGGAGAAGACCTTTCTGACGTCGAAAGTTACAACCCTGTGACCAACCAGTGGAGAAAACGAACTTCCATGAATGAGAAACGAAATGATCATgggGTGGCTGTTGTCAGTGGTTACTTATATGTAGTGGGTGGAATGTCGATTGAAGGTTATTTAAATACTGCTGAAAGATATAATCCAAAAACCGATAAGTGGACGAGGATCCATTCGTTGAATCAAAATAGACATGCAATGGCATCTGCggatttcaatggaaaattagtGATCGTAGGTGGTTACTCAGACAACAACTTGATTTccacaatggaaatgtatgatgatgaaagtGATAATTGGATATCTATGCCATCTTTAAACATACCTCGACGGTATttcaatgtgataaaaattccaTGGCAATTGGCTAATGCCACATTATCGAGAGAAGTTCCaagataa
- Protein Sequence
- MFQAYKNDIIDGINHQLVKTEDNVEIQIKEEIDDYNDDHNMEECTDCEFSEPIETKKSKNSLIKGRRKSLRKKRKITPPKSIIYGVKALLKDEIKDCIKNEDKKCKRDNKTKKKDELVFIKYKCHICEVECKNWTALSLHASEVHGTNPQIKCVCSRILSNVRSVQRHKRKHDPNKCYTCDYCQKTFGSKKEIEMHILTHLPAIKPYVCCKCAKSFSSPYVLKVHENTHKPQEERFIWPCELCDKTFKTKGSLNHHMDSHADTAYQCPHCPMLLNTRMTLRNHLYVHDEIASHPCSMCKKTFKTKKNLTSHMKQHTGERPYSCPWCPRTFSSASNFRIHKRRMHPSEFELADKDNPYLRPKGVYPVYTVGTMVLKGTGMGMPNVPECRFKTKGALNKHRDTHGDTAYQCPHCPMLLNTRKTLKNHLYIHDESANHPCSVCKKAFKTKKYLKSHMKQHTGERPYSCPWCPRTFTSASNFRIHKQRMHPTEFQLADKQNPYLRPTVLLKHKVILVGGEDKDHNITNTVQSYDLNTGEIENLPPMKYARQKIAAIEFKGRVYAIGGYNENPLPYLEMWDPILKIWKTLTSMTIPRFGFQAAVLDDEILVVGGFNGEDLSDVESYNPVTNQWRKRTSMNEKRNDHGVAVVSGYLYVVGGMSIEGYLNTAERYNPKTDKWTRIHSLNQNRHAMASADFNGKLVIVGGYSDNNLISTMEMYDDESDNWISMPSLNIPRRYFNVIKIPWQLANATLSREVPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -